E.  Fita, Damrich, S., and Hamprecht, F. A., ?The Algebraic Path Problem for Graph Metrics?, 39th International Conference on Machine Learning, PMLR. Proceedings , vol. 162. pp. 19178-19204, 2022.

S.  Damrich, ?Discovering Structure without Labels?, Heidelberg University. 2022.

Q.  Garrido, Damrich, S., Jäger, A., Cerletti, D., Claassen, M., Najman, L., and Hamprecht, F. A., ?Visualizing hierarchies in scRNA-seq data using a density tree-biased autoencoder?, Bioinformatics, vol. 38 (Suppl 1), pp. i316-i324, 2022.

A.  Blattmann, Milbich, T., Dorkenwald, M., and Ommer, B., ?Behavior-Driven Synthesis of Human Dynamics?, Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR). 2021.

E.  Fita, Damrich, S., and Hamprecht, F. A., ?Directed Probabilistic Watershed?, NeurIPS. Proceedings, vol. 34. 2021.

A.  Blattmann, Milbich, T., Dorkenwald, M., and Ommer, B., ?iPOKE: Poking a Still Image for Controlled Stochastic Video Synthesis?, in Proceedings of the International Conference on Computer Vision (ICCV), 2021.

A.  Andersson, Diego, F., Hamprecht, F. A., and Wählby, C., ?ISTDECO: In Situ Transcriptomics Decoding by Deconvolution?, bioRxiv, 2021.

M.  Afifi, Derpanis, K. G., Ommer, B., and Brown, M. S., ?Learning Multi-Scale Photo Exposure Correction?, in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2021.

F. C.  Walter, Damrich, S., and Hamprecht, F. A., ?MultiStar: Instance Segmentation of Overlapping Objects with Star-Convex Polygons?, ISBI. pp. 295-298, 2021.

H.  Arlt, Sui, X., Folger, B., Adams, C., Chen, X., Remme, R., Hamprecht, F. A., DiMaio, F., Liao, M., Goodman, J. M., Farese, R. V., and Walther, T. C., ?Seipin forms a flexible cage at lipid droplet formation sites?. bioRxiv, 2021.

M. Amirul Islam, Kowal, M., Esser, P., Jia, S., Ommer, B., Derpanis, K. G., and Bruce, N., ?Shape or Texture: Understanding Discriminative Features in CNNs?, International Conference on Learning Representations (ICLR). 2021.

M.  Dorkenwald, Milbich, T., Blattmann, A., Rombach, R., Derpanis, K. G., and Ommer, B., ?Stochastic Image-to-Video Synthesis usin cINNs?, Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR). 2021.

S.  Damrich and Hamprecht, F. H., ?UMAP does not reproduce high-dimensional similarities due to negative sampling?. arXiv preprint, 2021.

S.  Damrich and Hamprecht, F. A., ?On UMAP's True Loss Function?, NeurIPS. Proceedings, vol. 34. 2021.

A.  Blattmann, Milbich, T., Dorkenwald, M., and Ommer, B., ?Understanding Object Dynamics for Interactive Image-to-Video Synthesis?, Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR). 2021.

B.  Brattoli, Büchler, U., Dorkenwald, M., Reiser, P., Filli, L., Helmchen, F., Wahl, A. - S., and Ommer, B., ?Unsupervised behaviour analysis and magnification (uBAM) using deep learning?, Nature Machine Intelligence, 2021.

A.  Wolny, Cerrone, L., Vijayan, A., Tofanelli, R., Vilches-Barro, A., Louveaux, M., Wenzel, C., Strauss, S., Wilson-Sanchez, D., Lymbouridou, R., Steigleder, S. S., Pape, C., Bailoni, A., Duran-Nebreda, S., Bassel, G. W., Lohmann, J. U., Tsiantis, M., Hamprecht, F. A., Schneitz, K., Maizel, A., and Kreshuk, A., ?Accurate and Versatile 3D Segmentation of Plant Tissues at Cellular Resolution?, eLife, vol. 9, 2020.

T.  Dencker, Klinkisch, P., Maul, S. M., and Ommer, B., ?Deep learning of cuneiform sign detection with weak supervision using transliteration alignment?, PLoS ONE, vol. 15, no. 12, 2020.

S. K.  Mustikovela, Jampani, V., De Mello, S., Liu, S., Iqbal, U., Rother, C., and Kautz, J., ?Self-Supervised Viewpoint Learning From Image Collections?, in CONSAC, 2020.

M.  Desana and Schnörr, C., ?Sum-Product Graphical Models?, Machine Learning, vol. 109, pp. 135?173, 2020.

M.  Dorkenwald, Büchler, U., and Ommer, B., ?Unsupervised Magnification of Posture Deviations Across Subjects?, Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR). 2020.

A. L.  Bendinger, Debus, C., Glowa, C., Karger, C. P., Peter, J., and Storath, M., ?Bolus arrival time estimation in dynamic contrast-enhanced magnetic resonance imaging of small animals based on spline models, in press?, Physics in Medicine and Biology, vol. 64, no. 4, 2019.

J.  Kleesiek, Morshuis, J. Nikolas, Isensee, F., Deike-Hofmann, K., Paech, D., Kickingereder, P., Köthe, U., Rother, C., Forsting, M., Wick, W., Bendszus, M., Schlemmer, H. Peter, and Radbruch, A., ?Can Virtual Contrast Enhancement in Brain MRI Replace Gadolinium?: A Feasibility Study?, Investigative Radiology, vol. 54, pp. 653?660, 2019.

R.  Mackowiak, Lenz, P., Ghori, O., Diego, F., Lange, O., and Rother, C., ?CEREALS - Cost-Effective REgion-based Active Learning for Semantic Segmentation?, in British Machine Vision Conference 2018, BMVC 2018, 2019.

E.  Kirschbaum, Haußmann, M., Wolf, S., Sonntag, H., Schneider, J., Elzoheiry, S., Kann, O., Durstewitz, D., and Hamprecht, F. A., ?LeMoNADe: Learned Motif and Neuronal Assembly Detection in calcium imaging videos?, ICLR. Proceedings. 2019.

Y.  Bengio, Deleu, T., Rahaman, N., Ke, R., Lachapelle, S., Bilaniuk, O., Goyal, A., and Pal, C., ?A Meta-Transfer Objective for Learning to Disentangle Causal Mechanisms?, arXiv preprint arXiv:1901.10912, 2019.

F.  E Sanmartin, Damrich, S., and Hamprecht, F. A., ?Probabilistic Watershed: Sampling all spanning forests for seeded segmentation and semi-supervised learning?, in Advances in Neural Information Processing Systems, 2019.

M.  Desana and Schnörr, C., ?Sum-Product Graphical Models?, Machine Learning, 2019.

M.  Esposito, Hennersperger, C., Göbl, R., Demaret, L., Storath, M., Navab, N., Baust, M., and Weinmann, A., ?Total variation regularization of pose signals with an application to 3D freehand ultrasound?, IEEE Transactions on Medical Imaging, vol. 38(10), pp. 2245-2258, 2019.

T.  Hoda?, Michel, F., Brachmann, E., Kehl, W., Buch, A. Glent, Kraft, D., Drost, B., Vidal, J., Ihrke, S., Zabulis, X., Sahin, C., Manhardt, F., Tombari, F., Kim, T. Kyun, Matas, J., and Rother, C., ?BOP: Benchmark for 6D object pose estimation?, in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2018, vol. 11214 LNCS, pp. 19?35.

F.  Draxler, ?The Energy Landscape of Deep Neural Networks?, Heidelberg University, 2018.

F.  Draxler, Veschgini, K., Salmhofer, M., and Hamprecht, F. A., ?Essentially No Barriers in Neural Network Energy Landscape?, ICML. Proceedings, vol. 80. p. 1308--1317, 2018.

O.  Ghori, Mackowiak, R., Bautista, M., Beuter, N., Drumond, L., Diego, F., and Ommer, B., ?Learning to Forecast Pedestrian Intention from Pose Dynamics?, in Intelligent Vehicles, IEEE, 2018, 2018.

A.  Vianello, Ackermann, J., Diebold, M., and Jähne, B., ?Robust Hough transform based 3D reconstruction from circular light fields?, in Conference on Computer Vision and Pattern Recognition (CVPR), 2018.

N.  Rahaman, Arpit, D., Baratin, A., Draxler, F., Lin, M., Hamprecht, F. A., Bengio, Y., and Courville, A., ?On the spectral bias of deep neural networks?, arXiv preprint arXiv:1806.08734, 2018.

H.  Schilling, Diebold, M., Rother, C., and Jähne, B., ?Trust your Model: Light Field Depth Estimation with inline Occlusion Handling?, CVPR. Proceedings. 2018.

H.  Schilling, Diebold, M., Rother, C., and Jähne, B., ?Trust your Model: Light Field Depth Estimation with Inline Occlusion Handling?, in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2018, pp. 4530?4538.

A.  Vianello, Manfredi, G., Diebold, M., and Jähne, B., ?3D reconstruction by a combined structure tensor and Hough transform light field approach?, tm - Technisches Messen, 2017.

R.  Dalitz, Petra, S., and Schnörr, C., ?Compressed Motion Sensing?, in Proc. SSVM, 2017, vol. 10302.

S.  Peter, Diego, F., Hamprecht, F. A., and Nadler, B., ?Cost-efficient Gradient Boosting?, NIPS, poster. 2017.

H.  Schilling, Diebold, M., Gutsche, M., and Jähne, B., ?On the design of a fractal calibration pattern for improved camera calibration?, tm - Technisches Messen, vol. 84, pp. 440?451, 2017.

J.  Kruse, Rother, C., Schmidt, U., and Dresden, T. U., ?Learning to Push the Limits of Efficient FFT-based Image Deconvolution - Supplemental Material?, 2017.

F.  Rathke, Desana, M., and Schnörr, C., ?Locally Adaptive Probabilistic Models for Global Segmentation of Pathological OCT Scans?, MICCAI. Proceedings. pp. 177-184, 2017.

F.  Rathke, Desana, M., and Schnörr, C., ?Locally Adaptive Probabilistic Models for Global Segmentation of Pathological OCT Scans?, in Proc. MICCAI, 2017.

V.  Ulman, Ma?ka, M., Magnusson, K. E. G., Ronneberger, O., Haubold, C., Harder, N., Matula, P., Matula, P., Svoboda, D., Radojevic, M., Smal, I., Rohr, K., Jaldén, J., Blau, H. M., Dzyubachyk, O., Lelieveldt, B., Xiao, P., Li, Y., Cho, S. - Y., Dufour, A., Olivo-Marin, J. C., Reyes-Aldasoro, C. C., Solis-Lemus, J. A., Bensch, R., Brox, T., Stegmaier, J., Mikut, R., Wolf, S., Hamprecht, F. A., Esteves, T., Quelhas, P., Demirel, Ö., Malström, L., Jug, F., Toman?ák, P., Meijering, E., Muñoz-Barrutia, A., Kozubek, M., and Ortiz-de-Solorzano, C., ?An Objective Comparison of Cell Tracking Algorithms?, Nature Methods, vol. 14, no. 12, pp. 1141-1152, 2017.

Ö.  Sümer, Dencker, T., and Ommer, B., ?Self-supervised Learning of Pose Embeddings from Spatiotemporal Relations in Videos?, in Proceedings of the IEEE International Conference on Computer Vision (ICCV), 2017.

S.  Peter, Kirschbaum, E., Both, M., Campbell, L. A., Harvey, B. K., Heins, C., Durstewitz, D., Diego, F., and Hamprecht, F. A., ?Sparse convolutional coding for neuronal assembly detection?, NIPS, poster. 2017.

A.  Vianello, Manfredi, G., Diebold, M., and Jähne, B., ?3D Reconstruction by a Combined Structure Tensor and Hough Transform Light-Field Approach?, Forum Bildverarbeitung. 2016.

M.  Desana and Schnörr, C., ?Expectation Maximization for Sum-Product Networks as Exponential Family Mixture Models?. 2016.

H.  Schilling, Diebold, M., Gutsche, M., Aziz-Ahmad, H., and Jähne, B., ?A fractal calibration pattern for improved camera calibration?, Forum Bildverarbeitung. 2016.

M.  Diebold, Gatto, A., and Jähne, B., ?Heterogeneous Light Fields?, in 2016 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2016, Las Vegas, NV, USA, June 27-30, 2016, 2016.

J.  Mund, Michel, F., Dieke-Meier, F., Fricke, H., Meyer, L., and Rother, C., ?Introducing LiDAR Point Cloud-based Object Classification for Safer Apron Operations?, in International Symposium on Enhanced Solutions for Aircraft and Vehicle Surveillance Applications, 2016.

M.  Schiegg, Diego, F., and Hamprecht, F. A., ?Learning Diverse Models: The Coulomb Structured Support Vector Machine?, ECCV. Proceedings, vol. LNCS 9907. Springer, pp. 585-599, 2016.

M.  Diebold, ?Light-Field Imaging and Heterogeneous Light Fields?, vol. Dissertation. IWR, Univ. Heidelberg, 2016.

F.  Diego and Hamprecht, F. A., ?Structured Regression Gradient Boosting?, CVPR. Proceedings. pp. 1459-1467, 2016.

M.  Kandemir, Haußmann, M., Diego, F., Rajamani, K., van der Laak, J., and Hamprecht, F. A., ?Variational weakly-supervised Gaussian processes?, BMVC. Proceedings. 2016.

J.  Kleesiek, Petersen, J., Döring, M., Maier-Hein, K., Köthe, U., Wick, W., Hamprecht, F. A., Bendszus, M., and Biller, A., ?Virtual Raters for Reproducible and Objective Assessments in Radiology?, Nature Scientific Reports, vol. 6, 2016.

B.  Krolla, Diebold, M., and Stricker, D., ?Light Field from Smartphone-Based Dual Video?, in Computer Vision - ECCV 2014 Workshops: Zurich, Switzerland, September 6-7 and 12, 2014, Proceedings, Part II, Cham: Springer International Publishing, 2015, pp. 600?610.

M.  Diebold, Blum, O., Gutsche, M., Wanner, S., Garbe, C. S., Baker, H., and Jähne, B., ?Light-field camera design for high-accuracy depth estimation?, Videometrics, Range Imaging, and Applications XIII. 2015.

M.  Diebold, Blum, O., Gutsche, M., Wanner, S., Garbe, C., Baker, H., and Jähne, B., ?Light-field camera design for high-accuracy depth estimation?, in Videometrics, Range Imaging, and Applications XIII, 2015.

E. - M.  Didden, Thorarinsdottir, T. L., Lenkoski, A., and Schnörr, C., ?Shape from Texture using Locally Scaled Point Processes?, Image Anal. Stereol., vol. 34, pp. 161-170, 2015.

C.  Decker, ?Automated Animal Behavior Classification?, University of Heidelberg, 2014.

C.  Decker and Hamprecht, F. A., ?Detecting individual body parts improves mouse behavior classification?, in Workshop on visual observation and analysis of Vertebrate And Insect Behavior (VAIB), 22nd International Conference on Pattern Recognition (ICPR). Proceedings, 2014.

A.  Denitiu, Petra, S., Schnörr, C., and Schnörr, C., ?An Entropic Perturbation Approach to TV-Minimization for Limited-Data Tomography?, in Discrete Geometry for Computer Imagery (DGCI) 2014, 2014, p. 262--274.

A.  Denitiu, Petra, S., Schnörr, C., and Schnörr, C., ?An Entropic Perturbation Approach to TV-Minimization for Limited-Data Tomography?, in Discrete Geometry for Computer Imagery (DGCI) 2014, 2014, pp. 262?274.

M.  Hoai, Torresani, L., De La Torre, F., and Rother, C., ?Learning discriminative localization from weakly labeled data?, in Pattern Recognition, 2014, vol. 47, pp. 1523?1534.

A.  Denitiu, Petra, S., Schnörr, C., and Schnörr, C., ?Phase Transitions and Cosparse Tomographic Recovery of Compound Solid Bodies from Few Projections?, Fundamenta Informaticae, vol. 135, p. 73--102, 2014.

A.  Denitiu, Petra, S., Schnörr, C., and Schnörr, C., ?Phase Transitions and Cosparse Tomographic Recovery of Compound Solid Bodies from Few Projections?, Fundamenta Informaticae, vol. 135, pp. 73?102, 2014.

L.  Distributions, ?Proof of Lemma 2 Proof of Lemma 3 Proof of Theorem 4 Proof of Lemma 10?, Proceedings of the Seventeenth International Conference on Artificial Intelligence and Statistics, pp. 9?11, 2014.

A.  Drory, Haubold, C., Avidan, S., and Hamprecht, F. A., ?Semi-Global Matching: A Principled Derivation in Terms of Message Passing?, in GCPR. Proceedings, 2014, pp. 43-53.

F.  Diego and Hamprecht, F. A., ?Sparse Space-Time Deconvolution for Calcium Image Analysis?, in NIPS. Proceedings, 2014, pp. 64-72.

B.  Krolla, Diebold, M., Goldlücke, B., and Stricker, D., ?Spherical Light Fields?, in Proceedings of the British Machine Vision Conference, 2014.

L.  Fiaschi, Diego, F., Grosser, K. - H., Schiegg, M., Köthe, U., Zlatic, M., and Hamprecht, F. A., ?Tracking indistinguishable translucent objects over time using weakly supervised structured learning?, in CVPR. Proceedings, 2014, pp. 2736 - 2743.

F.  Diego, Reichinnek, S., Both, M., and Hamprecht, F. A., ?Automated Identification of Neuronal Activity from Calcium Imaging by Sparse Dictionary Learning?, ISBI 2013. Proceedings, pp. 1058-1061, 2013.

R.  Mikut, Dickmeis, T., Driever, W., Geurts, P., Hamprecht, F. A., Kausler, B. X., Ledesma-Carbayo, M., Mare?e, R., Mikula, K., Pantazis, P., Ronneberger, O., Santos, A., and Stotzka, R., ?Automated Processing of Zebrafish Imaging Data: A Survey?, Zebrafish, vol. 10 (3), 2013.

M.  Diebold and Goldlücke, B., ?Epipolar Plane Image Refocusing for Improved Depth Estimation and Occlusion Handling.?, in VMV, 2013.

A.  Donath and Kondermann, D., ?How Good is Crowdsourcing for Optical Flow Ground Truth Generation??, submitted to CVPR, 2013.

F.  Diego and Hamprecht, F. A., ?Learning Multi-Level Sparse Representation?, in NIPS. Proceedings, 2013.

F.  Diego and Hamprecht, F. A., ?Learning Multi-Level Sparse Representation for Identifying Neuronal Activity?, in Signal Processing with Adaptive Sparse Structured Representations Workshop (SPARS). Book of Abstracts., 2013.

T.  Kröger, Mikula, S., Denk, W., Köthe, U., and Hamprecht, F. A., ?Learning to Segment Neurons with Non-local Quality Measures?, in MICCAI 2013. Proceedings, part II, 2013, vol. 8150, pp. 419-427.

J.  Davis, Jähne, B., Kolb, A., Raskar, R., Theobalt, C., Davis, J., Jähne, B., Raskar, R., Theobalt, C., and Kolb, A., Eds., ?Time-of-Flight Imaging: Algorithms, Sensors and Applications (Dagstuhl Seminar 12431)?, Dagstuhl Reports, vol. 2, p. 79--104, 2013.

B.  Andres, Köthe, U., Kröger, T., Helmstaedter, M., Briggmann, K. L., Denk, W., and Hamprecht, F. A., ?3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries?, Medical Image Analysis, vol. 16 (2012), pp. 796-805, 2012.

C. M.  Zechmann, Menze, B. H., Kelm, B. Michael, Zamecnik, P., Ikinger, U., Waldherr, R., Delorme, S., Hamprecht, F. A., and Bachert, P., ?Automated vs. manual pattern recognition of 3D 1H MRSI data of patients with prostate cancer?, Academic Radiology, vol. 19, 6, pp. 675-684, 2012.

B.  Andres, Kröger, T., Briggmann, K. L., Denk, W., Norogod, N., Knott, G. W., Köthe, U., and Hamprecht, F. A., ?Globally Optimal Closed-Surface Segmentation for Connectomics?, in ECCV 2012. Proceedings, Part 3, 2012, pp. 778-791.

F.  Diego, Serrat, J., and Lo?pez, A. M., ?Joint SpatioTemporal Alignment of Sequences?, IEEE Transactions on Multimedia (TMM), vol. PP (99), p. 1, 2012.

J. M.  A?lvarez, Gevers, T., Diego, F., and Lo?pez, A. M., ?Road Geometry Classification by Adaptive Shape Models?, IEEE Transactions on Intelligent Transportation Systems (ITS), vol. 99, pp. 1-10, 2012.

C. N.  Straehle, Köthe, U., Briggman, K., Denk, W., and Hamprecht, F. A., ?Seeded watershed cut uncertainty estimators for guided interactive segmentation?, in CVPR 2012. Proceedings, 2012, pp. 765 - 772.

L.  Maier-Hein, Franz, A. M., Fangerau, M., Schmidt, M., Seitel, A., Mersmann, S., Kilgus, T., Groch, A., Yung, K., Santos, T. R.  dos, and Meinzer, H. - P., ?Towards mobile augmented reality for on-patient visualization of medical images?, in Bildverarbeitung für die Medizin (2011), 2011, p. 389--393.

J.  Lellmann, Breitenreicher, D., and Schnörr, C., ?Fast and Exact Primal-Dual Iterations for Variational Problems in Computer Vision?, in European Conference on Computer Vision (ECCV), 2010, vol. 6312, p. 494--505.

J.  Lellmann, Breitenreicher, D., and Schnörr, C., ?Fast and Exact Primal-Dual Iterations for Variational Problems in Computer Vision?, in European Conference on Computer Vision (ECCV), 2010, vol. 6312, pp. 494?505.

D.  Daume, ?Fusion von Midwave-infrared- und Longwave-infrared-Wärmebildgeräten zur Klassifizierung von Flugobjekten?, Institut für Umweltphysik, Fakultät für Physik und Astronomie, Univ.\ Heidelberg, 2010.

L.  Ding and Yilmaz, A., ?Interactive image segmentation using probabilistic hypergraphs?, Pattern Recognition, vol. 43, pp. 1863?1873, 2010.

J. H.  Kappes, Schmidt, S., and Schnörr, C., ?MRF Inference by k-Fan Decomposition and Tight Lagrangian Relaxation?, in European Conference on Computer Vision (ECCV), 2010, vol. 6313, p. 735--747.

J. H.  Kappes, Schmidt, S., and Schnörr, C., ?MRF Inference by k-Fan Decomposition and Tight Lagrangian Relaxation?, in European Conference on Computer Vision (ECCV), 2010, vol. 6313, p. 735--747.

J. H.  Kappes, Schmidt, S., and Schnörr, C., ?MRF Inference by k-Fan Decomposition and Tight Lagrangian Relaxation?, in European Conference on Computer Vision (ECCV), 2010, vol. 6313, pp. 735?747.

F. O.  Kaster, Kassemeyer, S., Merkel, B., Nix, O., and Hamprecht, F. A., ?An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements?, in Bildverarbeitung für die Medizin 2010 -- Algorithmen, Systeme, Anwendungen, 2010, pp. 97-101.

B.  Jähne, Degreif, K., and Kuss, J., ?Wind/wave-tunnel measurements of chemical enhancement of the carbon dioxide gas exchange rate?, in 6th Int. Symp. Gas Transfer at Water Surfaces, Kyoto, May 17--21, 2010, 2010.

V.  Beushausen, Roetmann, K., Schmunk, W., Wellhausen, M., Garbe, C. S., and Jähne, B., ?2D-measurement technique for simultaneous quantitative determination of mixing ratio and velocity field in microfluidic applications?, Imaging Measurement Methods for Flow Analysis, Results of the DFG Priority Programme 1147 Imaging Measurement Methods for Flow Analysis 2003-2009, vol. 106. Springer, p. 155--164, 2009.

S.  Petra, Schröder, A., and Schnörr, C., ?3D Tomography from Few Projections in Experimental Fluid Mechanics?, Imaging Measurement Methods for Flow Analysis, vol. 106. Springer, pp. 63-72, 2009.

T.  Hörnlein, Jähne, B., and Süße, H., ?Boosting shift-invariant features?, in Pattern Recognition, 2009, vol. 5748, p. 121--130.

F. O.  Kaster, Kelm, B. Michael, Zechmann, C. M., Weber, M. - A., Hamprecht, F. A., and Nix, O., ?Classification of Spectroscopic Images in the DIROlab Environment?, in World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, 2009, vol. 25/V, p. 252--255.

S. V. E.  Keränen, DePace, A., Hendriks, C. L. Luengo, Fowlkes, C., Arbelaez, P., Ommer, B., Brox, T., Henriquez, C., Wunderlich, Z., Eckenrode, K., Fischer, B., Hammonds, A., and Celniker, S. E., ?Computational Analysis of Quantitative Changes in Gene Expression and Embryo Morphology between Species?, in Evolution-The Molecular Landscape, 2009.

C. S.  Garbe, Kondermann, D., Jehle, M., and Jähne, B., ?Spatiotemporal image analysis for flow measurements?, Imaging Measurement Methods for Flow Analysis, Results of the DFG Priority Programme 1147 Imaging Measurement Methods for Flow Analysis 2003-2009, vol. 106. Springer, p. 289--305, 2009.

A.  Vlasenko and Schnörr, C., ?Variational Approaches for Model-Based PIV and Visual Fluid Analysis?, Imaging Measurement Methods for Flow Analysis, vol. 106. Springer, pp. 247-256, 2009.

A.  Vlasenko and Schnörr, C., ?Variational Approaches for Model-Based PIV and Visual Fluid Analysis?, Imaging Measurement Methods for Flow Analysis, vol. 106. Springer, pp. 247-256, 2009.

A.  Berthe, Kondermann, D., Jähne, B., and Ketzscher, U., ?The wall PIV measurement technique for near wall flow fields in biofliud mechanics?, Imaging Measurement Methods for Flow Analysis, Results of the DFG Priority Programme 1147 Imaging Measurement Methods for Flow Analysis 2003-2009, vol. 106. Springer, p. 11--20, 2009.

M. Hoai Nguyen, Torresani, L., De La Torre, F., and Rother, C., ?Weakly supervised discriminative localization and classification: A joint learning process?, in Proceedings of the IEEE International Conference on Computer Vision, 2009, pp. 1925?1932.

M. Hoai Nguyen, Torresani, L., De La Torre, F., and Rother, C., ?Weakly supervised discriminative localization and classification: A joint learning process?, in Proceedings of the IEEE International Conference on Computer Vision, 2009, pp. 1925?1932.

J. F.  Acker, Berkels, B., Bredies, K., Diallo, M. S., Droske, M., Garbe, C. S., Holschneider, M., Hron, J., Kondermann, C., Kulesh, M., Maass, P., Olischläger, N., and Peitgen, H. - O., ?Inverse Problems and Parameter Identification in Image Processing?, Mathematical Methods in Time Series Analysis and Digital Image Processing. Springer, p. 111--151, 2008.

C. S.  Garbe, Krajsek, K., Pavlov, P., Andres, B., Mühlich, M., Stuke, I., Mota, C., Böhme, M., Haker, M., Schuchert, T., Scharr, H., Aach, T., and Barth, E., ?Nonlinear Analysis of Multi-Dimensional Signals?, Mathematical Methods in Signal Processing and Digital Image Analysis. Springer, pp. 231-288, 2008.

C. S.  Garbe, Krajsek, K., Pavlov, P., Andres, B., Mühlich, M., Stuke, I., Mota, C., Böhme, M., Haker, M., Schucher, T., Scharr, H., Aach, T., and Barth, E., ?Nonlinear analysis of multi-dimensional signals: local adaptive estimation of complex motion and orientation patterns?, Mathematical Methods in Time Series Analysis and Digital Image Processing. Springer, pp. 231-288, 2008.

B.  Andres, Köthe, U., Helmstaedter, M., Denk, W., and Hamprecht, F. A., ?Segmentation of SBFSEM Volume Data of Neural Tissue by Hierarchical Classification?, in Pattern Recognition. 30th DAGM Symposium Munich, Germany, June 10-13, 2008. Proceedings, 2008, vol. 5096, pp. 142-152.

C.  Weber, Zechmann, C. M., Kelm, B. Michael, Zamecnik, R., Hendricks, D., Waldherr, R., Hamprecht, F. A., Delorme, S., Bachert, P., and Ikinger, U., ?Comparison of correctness of manuel and automatic evaluation of MR-spectrum with prostrate cancer?, Der Urologe, vol. 46, p. 1252, 2007.

K.  Degreif, Jähne, B., and Jähne, B., ?Estimating the viscous shear stress at the water surface from active thermography?, Transport at the Air Sea Interface --- Measurements, Models and Parameterizations. Springer-Verlag, p. 223--239, 2007.

B. H.  Menze, Kelm, B. Michael, and Hamprecht, F. A., ?From eigenspots to fisherspots -- latent spaces in the nonlinear detection of spot patterns in a highly variable background?, in Advances in data analysis, 2007, vol. 33, pp. 255-262.

T.  Preusser, Droske, M., Garbe, C. S., Rumpf, M., and Telea, A., ?A phase field method for joint denoising, edge detection, and motion estimation in image sequence processing.?, SIAM Journal of Applied Mathematics, vol. 68, pp. 599-618, 2007.

S.  Schmidt, Kappes, J. H., Bergtholdt, M., Pekar, V., Dries, S., Bystrov, D., and Schnörr, C., ?Spine Detection and Labeling Using a Parts-Based Graphical Model?, in Proc. 20th International Conference on Information Processing in Medical Imaging (IPMI 2007), 2007, vol. 4584, pp. 122-133.

S.  Schmidt, Kappes, J. H., Bergtholdt, M., Pekar, V., Dries, S., Bystrov, D., and Schnörr, C., ?Spine Detection and Labeling Using a Parts-Based Graphical Model?, in Proc. 20th International Conference on Information Processing in Medical Imaging (IPMI 2007), 2007, vol. 4584, pp. 122-133.

A.  Falkenroth, Degreif, K., Jähne, B., and Jähne, B., ?Visualisation of oxygen concentration fields in the mass boundary layer by fluorescence quenching?, Transport at the Air Sea Interface --- Measurements, Models and Parameterizations. Springer Verlag, 2007.

C. M.  Zechmann, Kelm, B. Michael, Zamecnik, P., Ikinger, U., Waldherr, R., Röll, S., Delorme, S., Hamprecht, F. A., and Bachert, P., ?Can man still beat the machine? Automated vs. manual pattern recognition of 3D MRSI data of prostate cancer patients?, in Proceedings of the 16th ISMRM, 2006.

M. P.  Lichy, Bachert, P., Hamprecht, F. A., Weber, M. - A., Debus, J., Schulz-Ertner, D., Kauczor, H. - U., and Schlemmer, H. - P., ?Einsatz der 1H-MR-spektroskopischen Bildgebung in der Strahlentherapie: Cholin als Marker für die Bestimmung der relativen Wahrscheinlichkeit eines Tumorprogresses nach Bestrahlung glialer Hirntumoren?, Zeitung für Röntgenforschung, vol. 178, pp. 627-633, 2006.

K.  Degreif, Kuss, J., and Jähne, B., ?Gas exchange measurements: the chemically enhanced gas transfer of carbon dioxide at the water surface?, in Verhandlungen der Deutschen Physikalischen Gesellschaft, Spring Conference, Heidelberg, 15.-17.03.2006, 2006.

K.  Degreif and Jähne, B., ?Gas exchange measurements: transition of the boundary conditions from a flat to a rough water surface?, in Verhandlungen der Deutschen Physikalischen Gesellschaft, Spring Conference, Heidelberg, 15.-17.03.2006, 2006.

K.  Degreif, ?Untersuchungen zum Gasaustausch - Entwicklung und Applikation eines zeitlich aufgelösten Massenbilanzverfahrens?. Institut für Umweltphysik, Fakultät für Physik und Astronomie, Univ.\ Heidelberg, 2006.

A.  Telea, Preußer, T., Garbe, C. S., Droske, M., and Rumpf, M., ?A variational approach to joint denoising, edge detection and motion estimation?, in Proceedings of the 28th DAGM Symposium on Pattern Recognition, 2006, p. 525--535.

B.  Jähne, Schimpf, U., Garbe, C. S., and Degreif, K., ?The Heidelberg Aeolotron: new perspectives for laboratory investigations of small-scale air-sea interaction?, in Poster presented at: International Liege Colloquium on Ocean Dynamics, Gas Transfer at Water Surfaces, 2005.

M.  Klar, Jehle, M., Jähne, B., Detert, M., and H., J. G., ?Analysis of subsurface gravel layer flow caused by turbulent open-channel flow using 3D PTV and pressure sensor techniques?, in BAW-Workshop Soil and Bed Stability - Interaction Effects between Geotechnics and Hydraulic Engineering, 2004.

K.  Degreif and Jähne, B., ?Gas exchange experiments using time resolved UV-spectroscopy?, in Verhandlungen der Deutschen Physikalischen Gesellschaft, Spring Conference, Munich, 22.-26.03.2004, 2004.

M.  Detert, Jirka, G. H., Jehle, M., Klar, M., Jähne, B., Köhler, H. - J., and Wenka, T., ?Pressure fluctuations within subsurface gravel bed caused by turbulent open-channel flow?, in Proc. of River Flow 2004, 2004, pp. 695-701.

M.  Klar, Jehle, M., Detert, M., Jirka, G. H., Jähne, B., Köhler, H. - J., and Wenka, T., ?Simultaneous 3D PTV and micro-pressure sensor equipment for flow analysis in subsurface gravel layer?, in Proc. of River Flow 2004, 2004, p. 703--712.

P.  Ruhnau, Kohlberger, T., Nobach, H., and Schnörr, C., ?Variational Optical Flow Estimation for Particle Image Velocimetry?, Proc. Lasermethoden in der Strömungsmeßtechnik. Deutsche Gesellschaft für Laser-Anemometrie GALA e.V., Karlsruhe, 2004.

M. C.  Scholes, Matrai, P. A., Andreae, M. O., Smith, K. A., Manning, M. R., Artaxo, P., Barrie, L. A., Bates, T. S., Butler, J. H., Ciccioli, P., Cieslik, S. A., Delmas, R. J., and Dentener, F. J., ?Biosphere-Atmosphere Interactions?, Atmospheric Chemistry in a Changing World, An Integration and Synthesis of a Decade of Tropospheric Chemistry Research. Springer, p. 19--71, 2003.

S. R.  Long and Klinke, J., ?A closer look at short waves generated by wave interactions with adverse currents?, in Gas Transfer at Water Surfaces, 2002, vol. 127, p. 121--128.

C. J.  Zappa, Asher, W. E., Jessup, A. T., Klinke, J., and Long, S. R., ?Effect of microscale wave breaking on air-water gas transfer?, in Gas Transfer at Water Surfaces, 2002, vol. 127, p. 23--29.

T.  Dierig, ?Gewinnung von Tiefenkarten aus Fokusserien?. IWR, Fakultät für Physik und Astronomie, Univ.\ Heidelberg, 2002.

U.  Schimpf, Jähne, B., and Haußecker, H., ?On the investigations of statistical properties of the micro turbulence at the ocean surface?, in Gas Transfer at Water Surfaces, 2002, vol. 127, p. 51--57.

H.  Spies, Dierig, T., Garbe, C. S., and Würtz, R. P., ?Local models for dynamic processes in image sequences?, in Dynamic Perception, 2002, p. 59--64.

C. S.  Garbe, Haußecker, H., and Jähne, B., ?Measuring the sea surface heat flux and probability distribution of surface renewal events?, in Gas Transfer at Water Surfaces, 2002, vol. 127, pp. 109-114.

P. J.  Gee, Hamprecht, F. A., Schuler, L. D., van Gunsteren, W. F., Duchardt, E., Schwalbe, H., Albert, M., and Seebach, D., ?A molecular dynamics simulation study of the conformational preferences of oligo-(3- hydroxyalcanoic acids) in chloroform solution?, Helv. Chim. Acta, vol. 85, pp. 618-632, 2002.

E. J.  Bock, Edson, J. B., Frew, N. M., Hara, T., Haußecker, H., Jähne, B., McGilles, W. R., McKenna, S. P., Nelson, R. K., Schimpf, U., and Uz, B. M., ?Overview of the CoOP experiments: physical and chemical measurements parameterizing air-sea gas transfer?, in Gas Transfer at Water Surfaces, 2002, vol. 127, p. 39--44.

H.  Haußecker, Schimpf, U., Garbe, C. S., and Jähne, B., ?Physics from IR image sequences: Quantitative analysis of transport models and parameters of air-sea gas transfer?, in Gas Transfer at Water Surfaces, 2002, vol. 127, p. 103--108.

T.  Hara, Uz, B. M., Wei, H., Edson, J. B., Frew, N. M., McGilles, W. R., McKenna, S. P., Bock, E. J., Haußecker, H., and Schimpf, U., ?Surface wave observations during CoOP experiments and their relations to air-sea gas transfer?, in Gas Transfer at Water Surfaces, 2002, vol. 127, p. 45--49.

F. A.  Hamprecht, Peter, C., Daura, X., Thiel, W., and van Gunsteren, W. F., ?A strategy for analysis of (molecular) equilibrium simulations: configuration space density estimation, clustering and visualization?, Journal of Chemical Physics, vol. 114, pp. 2079-2089, 2001.

B.  Kümmerlen, Dauwe, S., Schmund, D., Schurr, U., Jähne, B., and Haußecker, H., ?Thermography to measure water relations of plant leaves?, Computer Vision and Applications. A Guide for Students and Practitioners. Academic Press, p. 636--637, 2000.

P.  Geißler, Dierig, T., Mallot, H. A., and Jähne, B., ?Three-dimensional imaging algorithms?, Computer Vision and Applications - A Guide for Students and Practitioners. Academic Press, p. 397--438, 2000.

B.  Jähne, ?Blätter, Wind und Wellen. Unsichtbares wird sichtbar.?, computer art faszination, dot'99. dot-Verlag, p. 38--43, 1999.

B.  Kümmerlen, Dauwe, S., Schmund, D., Schurr, U., Jähne, B., Geißler, P., and Haußecker, H., ?Thermography to measure water relations of plant leaves?, Handbook of Computer Vision and Applications, vol. 3: Systems and Applications. Academic Press, pp. 763-781, 1999.

J.  Dieter, ?Analysis of Small-Scale Ocean Wind Waves by Image Sequence Analysis of Specular Reflections?. IWR, Fakultät für Physik und Astronomie, Univ.\ Heidelberg, 1998.

F.  Hering, Haußecker, H., Dieter, J., Netzsch, T., and Jähne, B., ?A comprehensive study of algorithms for multidimensional flow field diagnostics?, in Proc. Optical 3D Measurement Techniques IV, Zurich, Sept. 29 - Oct. 2, 1997, 1997, p. 436--443.

S.  Dauwe, ?Infrarotuntersuchungen zur Bestimmung des Wasser- und Wärmehaushalts eines Blattes?, University of Heidelberg, 1997.

J.  Dieter, Lauer, H., Jähne, B., and Grün, A., ?Measurements of slope statistics on a wind driven water surface?, in Optical 3D Measurement Techniques 4 - Applications in architecture, quality control, robotics, navigation, medical imaging and animation, 1997.

P. S.  Liss, Watson, A. J., Bock, E. J., Jähne, B., Asher, W. E., Frew, N. M., Hasse, L., Korenowski, G. M., Merlivat, L., Phillips, L. F., Schlüssel, P., and Woolf, D. K., ?Report Group 1 - Physical processes in the microlayer and the air-sea exchange of trace gases?, The Sea Surface and Global Change. Cambridge University Press, p. 1--33, 1997.

S.  Gerloff, Hagemann, A., Schnörr, C., Tieck, S., Stiehl, H. S., Dombrowski, R., Dreyer, M., and Wiesendanger, R., ?Semi?Automated Analysis of SXM Images?, in Proc. 9th Int. Conf. on Scanning Tunneling Microscopy/Spectroscopy and Related Techniques (STM'97), Hamburg, Germany, 1997.

S.  Waas and Jähne, B., ?Combined height/slope/curvature measurements of short ocean wind waves?, in Proc.\ The Air-Sea Interface, Radio and Acoustic Sensing, Turbulence and Wave Dynamics, Marseille, 24--30. June 1993, 1996, p. 383--388.

F.  Hering, Wierzimok, D., Melville, W. K., and Jähne, B., ?Combined wave and flow field visualization for investigation of short-wave/long-wave interaction?, in Proc.\ The Air-Sea Interface, Radio and Acoustic Sensing, Turbulence and Wave Dynamics, Marseille, 24--30. June 1993, 1996, p. 133--138.

G. R.  Spedding, Klinke, J., and Long, S. R., ?Estimating $\omega(k)$ in an unsteady, wind-generated surface wave field from the 2D complex wavelet transform of the surface slope?, in Proc.\ The Air-Sea Interface, Radio and Acoustic Sensing, Turbulence and Wave Dynamics, Marseille, 24--30. June 1993, 1996, p. 373--382.

T.  Münsterer and Jähne, B., ?A fluorescence technique to measure concentration profiles in the aqueous mass boundary layer?, in Proc.\ The Air-Sea Interface, Radio and Acoustic Sensing, Turbulence and Wave Dynamics, Marseille, 24--30. June 1993, 1996, p. 517--522.

B.  Jähne, ?Measurements of the modulation of short waves from image sequences?, in Proc.\ The Air-Sea Interface, Radio and Acoustic Sensing, Turbulence and Wave Dynamics, Marseille, 24--30. June 1993, 1996, p. 389--394.

J. A. M.  Janssen, Calkoen, C. J., van Halsema, D., Jähne, B., Janssen, P. A. E. M., Oost, W. A., Snoeij, P., Vogelzang, J., and Wallbrink, H., ?The VIERS scatterometer algorithm?, in Proc.\ The Air-Sea Interface, Radio and Acoustic Sensing, Turbulence and Wave Dynamics, Marseille, 24--30. June 1993, 1996, p. 749--754.

J.  Klinke and Jähne, B., ?Wave number spectra of short wind waves: implications from laboratory studies?, in Proc.\ The Air-Sea Interface, Radio and Acoustic Sensing, Turbulence and Wave Dynamics, Marseille, 24--30. June 1993, 1996, p. 367--372.

E. J.  Bock, Edson, J. B., Frew, N. M., Karachintsev, A., McGilles, W. R., Nelson, R. K., Hansen, K., Jähne, B., Hara, T., Uz, B. M., Jähne, B., Dieter, J., Klinke, J., and Haußecker, H., ?Description of the science plan for the April 1995 CoOP experiment, `gas transfer in coastal waters', performed from the research vessel New Horizon?, in Air-Water Gas Transfer, Selected Papers, 3rd Intern. Symp. on Air-Water Gas Transfer, 1995, p. 801--810.

J.  Dieter, Hering, F., Bremeyer, R., Jähne, B., and Jähne, B., ?Measurements of velocity profiles in the aqueous boundary layer at a wind-driven water surface?, in Air-Water Gas Transfer, Selected Papers, 3rd Intern. Symp. on Air-Water Gas Transfer, 1995, p. 145--152.

J.  Dieter, Bremeyer, R., and Hering, F., ?Flow measurements close to the free air/sea interface?, in Proceedings of the 7th International Symposium on Applications of Laser Techniques to Fluid Mechanics, Lisbon, Portugal, July 11.--14. 1994, 1994, vol. II, p. 22.2.1--6.

J.  Dieter, ?Messung von Strömungen in der viskosen Grenzschicht an der Wasseroberfläche?, Institut für Umweltphysik, Fakultät für Physik und Astronomie, Univ.\ Heidelberg, 1994.

J. A. M.  Janssen, Calkoen, C. J., van Halsema, D., Jähne, B., Janssen, P. A. E. M., Oost, W. A., Snoeij, P., Vogelzang, J., and Wallbrink, H., ?The VIERS scatterometer algorithm?, in Proc. The Air-Sea Interface, Radio and Acoustic Sensing, Turbulence and Wave Dynamics, Marseille, 24--30. June 1993, 1993, p. 749--754.

D.  van Halsema, de Loor, P., and Jähne, B., ?VIERS-1: A Programme of Wind Scatterometry?, in Geoscience and Remote Sensing Symposium, Proc.\ IGARSS'88, 1988, vol. 1, p. 572.

D.  Wierzimok, Jähne, B., and Dengler, J., ?Bildfolgenanalyse dreidimensionaler turbulenter Strömungen?, in Proc. 9. DAGM-Symposium zur Mustererkennung 1987, 1987, vol. 149, p. 288.

B.  Jähne, Heinz, G., and Dietrich, W., ?Measurement of the diffusion coefficients of sparingly soluble gases in water?, J. Geophys. Res., vol. 92, p. 10,767--10,776, 1987.

B.  Jähne, Münnich, K. O., Bösinger, R., Dutzi, A., Huber, W. A., and Libner, P., ?On the parameters influencing air-water gas exchange?, J. Geophys. Res., vol. 92, p. 1937--1950, 1987.

A.  Dutzi, ?Untersuchungen zum Einfluss der Temperatur auf den Gasaustausch?, Institut für Umweltphysik, Fakultät für Physik und Astronomie, Univ.\ Heidelberg, 1984.

B.  Jähne, Huber, W. A., Dutzi, A., Wais, T., and Ilmberger, J., ?Wind/wave-tunnel experiments on the Schmidt number and wave field dependence of air-water gas exchange?, in Gas transfer at water surfaces, 1984, p. 303--309.

W.  Dietrich, ?Aufbau und Erprobung eines neuartigen Diaphragmaverfahrens zur Messung der Diffusionskonstanten von in Wasser gelösten Gasen?, Institut für Umweltphysik, Fakultät für Physik und Astronomie, Univ.\ Heidelberg, 1983.