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2008
B. Andres, Köthe, U., Helmstaedter, M., Denk, W., and Hamprecht, F. A., “Segmentation of SBFSEM Volume Data of Neural Tissue by Hierarchical Classification”, in Pattern Recognition. 30th DAGM Symposium Munich, Germany, June 10-13, 2008. Proceedings, 2008, vol. 5096, pp. 142-152.PDF icon Technical Report (1.21 MB)
2009
S. V. E. Keränen, DePace, A., Hendriks, C. L. Luengo, Fowlkes, C., Arbelaez, P., Ommer, B., Brox, T., Henriquez, C., Wunderlich, Z., Eckenrode, K., Fischer, B., Hammonds, A., and Celniker, S. E., “Computational Analysis of Quantitative Changes in Gene Expression and Embryo Morphology between Species”, in Evolution-The Molecular Landscape, 2009.
B. Andres, Köthe, U., Bonea, A., Nadler, B., and Hamprecht, F. A., “Quantitative Assessment of Image Segmentation Quality by Random Walk Relaxation Times”, in Pattern Recognition. 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings, 2009, vol. 5748, pp. 502-511.PDF icon Technical Report (3.08 MB)
M. Hanselmann, Köthe, U., Kirchner, M., Renard, B. Y., Amstalden, E. R., Glunde, K., Heeren, R. M. A., and Hamprecht, F. A., “Towards Digital Staining using Imaging Mass Spectrometry and Random Forests”, Journal of Proteome Research, vol. 8, pp. 3558-3567, 2009.PDF icon Technical Report (1.47 MB)
2010
B. Andres, Kappes, J. H., Köthe, U., Schnörr, C., and Hamprecht, F. A., “An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM”, in Pattern Recognition, Proc.~32th DAGM Symposium, 2010, pp. 353-362.
B. Andres, Kappes, J. H., Köthe, U., Schnörr, C., and Hamprecht, F. A., “An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM”, in Pattern Recognition, Proc.~32th DAGM Symposium, 2010.PDF icon Technical Report (218.43 KB)
U. Köthe, Andres, B., Kröger, T., and Hamprecht, F. A., “Geometric Analysis of 3D Electron Microscopy Data”, in Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM), 2010, pp. 22-26.PDF icon Technical Report (1.43 MB)
B. Andres, Köthe, U., Kröger, T., and Hamprecht, F. A., “How to Extract the Geometry and Topology from Very Large 3D Segmentations”, ArXiv e-prints, 2010.PDF icon Technical Report (1.44 MB)
B. Andres, Kappes, J. H., Köthe, U., and Hamprecht, F. A., “The Lazy Flipper: MAP Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search”, ArXiv e-prints, 2010.PDF icon Technical Report (625.06 KB)
B. Andres, Köthe, U., Kröger, T., and Hamprecht, F. A., “Runtime-Flexible Multi-dimensional Views and Arrays for C++98 and C++0x”, ArXiv e-prints, 2010.PDF icon Technical Report (415.54 KB)
M. Atif, Zimmermann, K., and Jähne, B., “A space-variant (3D) image simulation tool for computational cameras”, in International Conference on Computational Photography (ICCP) 2010, 2010.
A. Berthe, Kondermann, D., Christensen, C., Goubergrits, L., Garbe, C. S., Affeld, K., and Kertzscher, U., “Three-dimensional, three-component wall-PIV”, Exp. Fluids, vol. 48, p. online, 2010.
2011
B. Andres, “Automated Segmentation of Large 3D Images of Nervous Systems Using a Higher-order Graphical Model”. University of Heidelberg, 2011.
J. Hendrik Kappes, Speth, M., Andres, B., Reinelt, G., and Schnörr, C., “Globally Optimal Image Partitioning by Multicuts”, in EMMCVPR, 2011.
J. H. Kappes, Speth, M., Andres, B., Reinelt, G., and Schnörr, C., “Globally Optimal Image Partitioning by Multicuts”, in EMMCVPR, 2011.PDF icon Technical Report (7.47 MB)
J. H. Kappes, Speth, M., Andres, B., Reinelt, G., and Schnörr, C., “Globally Optimal Image Partitioning by Multicuts”, in EMMCVPR, 2011, pp. 31-44.PDF icon Technical Report (7.3 MB)
A. Monroy, Kröger, T., Arnold, M., and Ommer, B., “Parametric Object Detection for Iconographic Analysis”, in Scientific Computing & Cultural Heritage, 2011.
B. Andres, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “Probabilistic Image Segmentation with Closedness Constraints”, in Proceedings of ICCV, 2011.
B. Andres, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “Probabilistic Image Segmentation with Closedness Constraints”, in ICCV, Proceedings, 2011, pp. 2611 - 2618.PDF icon Technical Report (8.18 MB)
B. Andres, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “Probabilistic Image Segmentation with Closedness Constraints”, in Proceedings of ICCV, 2011.PDF icon Technical Report (2.95 MB)
B. Antic and Ommer, B., “Video Parsing for Abnormality Detection”, in Proceedings of the IEEE International Conference on Computer Vision, 2011, p. 2415--2422.PDF icon Technical Report (990.21 KB)
2012
B. Andres, Köthe, U., Kröger, T., Helmstaedter, M., Briggmann, K. L., Denk, W., and Hamprecht, F. A., “3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries”, Medical Image Analysis, vol. 16 (2012), pp. 796-805, 2012.PDF icon Technical Report (20.85 MB)
B. X. Kausler, Schiegg, M., Andres, B., Lindner, M., Köthe, U., Leitte, H., Wittbrodt, J., Hufnagel, L., and Hamprecht, F. A., “A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness”, in ECCV 2012. Proceedings, 2012, vol. 7574, pp. 144-157.PDF icon Technical Report (809.07 KB)
J. Funke, Andres, B., Hamprecht, F. A., Cardona, A., and Cook, M., “Efficient Automatic 3D-Reconstruction of Branching Neurons from EM Data”, CVPR 2012. Proceedings, pp. 1004-1011, 2012.PDF icon Technical Report (1.64 MB)
B. Andres, Kröger, T., Briggmann, K. L., Denk, W., Norogod, N., Knott, G. W., Köthe, U., and Hamprecht, F. A., “Globally Optimal Closed-Surface Segmentation for Connectomics”, in ECCV 2012. Proceedings, Part 3, 2012, pp. 778-791.PDF icon Technical Report (2.72 MB)
B. Andres, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models”, in Computer Vision - {ECCV} 2012 - 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part {VII}, 2012.PDF icon Technical Report (446.28 KB)
B. Andres, Kappes, J. Hendrik, Beier, T., Köthe, U., and Hamprecht, F. A., “The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models”, in ECCV 2012, 2012.
B. Andres, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models”, in ECCV 2012, 2012.PDF icon Technical Report (532.64 KB)
B. Andres, Beier, T., and Kappes, J. H., “OpenGM: A C++ Library for Discrete Graphical Models”, ArXiv e-prints, 2012.
M. Atif and Jähne, B., “Optimal Depth Estimation from a Single Image by Computational Imaging using Chromatic Aberrations”, in Forum Bildverarbeitung, 2012, p. 23--34.
D. Kondermann, Abraham, S., Förstner, W., Gehrig, S., Imiya, A., Jähne, B., Klose, F., Magor, M., Mayer, H., Mester, R., Pajdla, T., Reulke, R., and Zimmer, H., “On Performance Analysis of Optical Flow Algorithms”, in Outdoor and Large-Scale Real-Worls Scene Analysis, Dagstuhl-Workshop 2011, 2012, vol. LNCS, pp. 329-355.
J. M. Álvarez, Gevers, T., Diego, F., and López, A. M., “Road Geometry Classification by Adaptive Shape Models”, IEEE Transactions on Intelligent Transportation Systems (ITS), vol. 99, pp. 1-10, 2012.
B. Antic and Ommer, B., “Robust Multiple-Instance Learning with Superbags”, in Proceedings of the Aian Conference on Computer Vision (ACCV) (Oral), 2012, p. 242--255.PDF icon Technical Report (319.58 KB)
D. Kiefhaber, Schaper, J., Rocholz, R., Zappa, C. J., Asher, W. E., Jessup, A. T., and Jähne, B., “Water Surface Topography Measurements with the Reflective Stereo Slope Gauge”, in AGU Ocean Science Meeting 2012, Salt Lake City, 2012.
2013
M. Arnold, Bell, P., and Ommer, B., “Automated Learning of Self-Similarity and Informative Structures in Architecture”, in Scientific Computing & Cultural Heritage, 2013.

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