Current Software (Official HCI-Repository)
Please check GITHUB for our latest software!
Archive
Public Software
Image Analysis
- VIGRA Library - Vision with Generic Algorithms
- ilastik - Interactive Learning and Segmentation Tool Kit
- Benchmarks
Open Source Software
Image Analysis
- VIGRA Library - Vision with Generic Algorithms
- ilastik - Interactive Learning and Segmentation Tool Kit
- CGP - Geometry and Topology Extraction from Very Large 3D Segmentations
- Pottslab - Multilabel segmentation for vector-valued images based on the Potts model
Machine Learning
- OpenGM Library - OpenGM: A C++ Optimization Library for Higher Order Graphical Models
Computational Proteomics
- SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists
- curveFDP - Estimation of confidence levels for peptide identifications
- pLSA - Probabilistic Latent Semantic Analysis of Imaging Mass Spectrometry Data in MATLAB
- NITPICK - R-packages: Peak Identification for Mass Spectrometry Data
- libmercury++ - ANSI-C++ library re-implementation of Rockwood's Mercury7 algorithm
- amsrpm - R-package for TIC and LC/MS peak alignment
- ms2preproc - Computational Preprocessing of MS/MS Spectra
- PSS - Protein Profile Similarity Srceening MATLAB toolbox
- HeXicon - Automatic Deuteration Distribution Estimation for HX-MS Experiments
- BICEPS - Error-Tolerant Peptide Identification
- AL-RF - Active Learning for Imaging Mass Spectrometry
General Purpose
- JDBC Interface - A minimalistic JDBC interface class which can be used from MATLAB without the database toolbox. A minimalistic JDBC interface class which can be used from MATLAB without the database toolbox.
G. Lapierre
Computational Diagnostics
- CSITOOLS - A matlab GUI and interface for the analysis of magnetic resonance spectroscopic imaging (MRSI/CSI) data