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2013
L. Fiaschi, Grosser, K. - H., Afonso, B., Zlatic, M., and Hamprecht, F. A., “Keeping Count: Leveraging Temporal Context to Count Heavily Overlapping Objects”, ISBI 2013.Proceedings, pp. 656-659, 2013.PDF icon Technical Report (711.68 KB)
L. Fiaschi, “Learning Based Biological Image Analysis”. University of Heidelberg, 2013.
2014
E. Eyjolfsdottir, Branson, S., Burgos-Artizzu, X. P., Hoopfer, E. D., Schor, J., Anderson, D. J., and Perona, P., “Detection of social actions in fruit flies”, Lecture Notes in Computer Science, vol. 8690, pp. 772–787, 2014.
M. Kandemir, Feuchtinger, A., Walch, A., and Hamprecht, F. A., “Digital Pathology: Multiple instance learning can detect Barrett'scancer”, ISBI. Proceedings. pp. 1348-1351, 2014.PDF icon Technical Report (2.86 MB)
A. Denitiu, Petra, S., Schnörr, C., and Schnörr, C., “An Entropic Perturbation Approach to TV-Minimization for Limited-Data Tomography”, in Discrete Geometry for Computer Imagery (DGCI) 2014, 2014, p. 262--274.PDF icon Technical Report (894.83 KB)
A. Denitiu, Petra, S., Schnörr, C., and Schnörr, C., “An Entropic Perturbation Approach to TV-Minimization for Limited-Data Tomography”, in Discrete Geometry for Computer Imagery (DGCI) 2014, 2014, pp. 262–274.
J. Yarkony, Zhang, C., and Fowlkes, C. C., “Hierarchical Planar Correlation Clustering for Cell Segmentation”, in EMMCVPR. Proceedings, 2014, vol. 8932, pp. 492-504.PDF icon Technical Report (548.12 KB)
M. Hornáček, Besse, F., Kautz, J., Fitzgibbon, A., and Rother, C., “Highly overparameterized optical flow using PatchMatch belief propagation”, in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2014, vol. 8691 LNCS, pp. 220–234.
F. Jug, Pietzsch, T., Kainmüller, D., Funke, J., Kaiser, M., van Nimwegen, E., Rother, C., and Myers, G., “Optimal joint segmentation and tracking of escherichia coli in the mother machine”, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 8677, pp. 25–36, 2014.
F. Besse, Rother, C., Fitzgibbon, A., and Kautz, J., “PMBP: PatchMatch Belief Propagation for correspondence field estimation”, International Journal of Computer Vision, vol. 110, pp. 2–13, 2014.
F. Besse, Rother, C., Fitzgibbon, A., and Kautz, J., “PMBP: PatchMatch Belief Propagation for correspondence field estimation”, International Journal of Computer Vision, vol. 110, pp. 2–13, 2014.
F. Besse, Rother, C., Fitzgibbon, A., and Kautz, J., “PMBP: PatchMatch Belief Propagation for correspondence field estimation”, International Journal of Computer Vision, vol. 110, pp. 2–13, 2014.
M. Hornáček, Fitzgibbon, A., and Rother, C., “SphereFlow: 6 DoF scene flow from RGB-D pairs”, in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2014, pp. 3526–3533.
L. Fiaschi, Diego, F., Grosser, K. - H., Schiegg, M., Köthe, U., Zlatic, M., and Hamprecht, F. A., “Tracking indistinguishable translucent objects over time using weakly supervised structured learning”, in CVPR. Proceedings, 2014, pp. 2736 - 2743.PDF icon Technical Report (1.47 MB)
2015
J. Funke, Hamprecht, F. A., and Zhang, C., “Learning to Segment: Training Hierarchical Segmentation under a Topological Loss”, in MICCAI. Proceedings, Part III, 2015, vol. 9351, pp. 268-275.PDF icon Technical Report (2.92 MB)
J. Funke, Hamprecht, F. A., and Zhang, C., “Learning to Segment: Training Hierarchical Segmentation under a Topological Loss”, in MICCAI. Proceedings, Part III, 2015, vol. 9351, pp. 268-275.PDF icon Technical Report (2.92 MB)
F. Friedl, Krah, N., and Jähne, B., “Optical sensing of oxygen using a modified Stern-Volmer equation for high laser irradiance”, Sensors and Actuators B: Chemical, vol. 206, p. 336--342, 2015.
F. Friedl, Krah, N., and Jähne, B., “Optical sensing of oxygen using a modified Stern-Volmer equation for high laser irradiance”, Sensors and Actuators B: Chemical, vol. 206, pp. 336–342, 2015.
J. Mund, Zouhar, A., Meyer, L., Fricke, H., and Rother, C., “Performance evaluation of LiDAR point clouds towards automated FOD detection on airport aprons”, in Proceedings of ATACCS 2015 - 5th International Conference on Application and Theory of Automation in Command and Control Systems, 2015, pp. 85–94.
J. Mund, Zouhar, A., Meyer, L., Fricke, H., and Rother, C., “Performance evaluation of LiDAR point clouds towards automated FOD detection on airport aprons”, in Proceedings of ATACCS 2015 - 5th International Conference on Application and Theory of Automation in Command and Control Systems, 2015, pp. 85–94.
R. Nair, Fitzgibbon, A., Kondermann, D., and Rother, C., “Reflection modeling for passive stereo”, in Proceedings of the IEEE International Conference on Computer Vision, 2015, vol. 2015 Inter, pp. 2291–2299.
A. Zouhar, Rother, C., and Fuchs, S., “Semantic 3-D labeling of ear implants using a global parametric transition prior”, in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2015, vol. 9350, pp. 177–184.
A. Kreshuk, Funke, J., Cardona, A., and Hamprecht, F. A., “Who is talking to whom: synaptic partner detection in anisotropic volumes of insect brain”, MICCAI. Proceedings, vol. LNCS 9349. Springer, pp. 661-668, 2015.PDF icon Technical Report (2.14 MB)
2016
J. Mund, Michel, F., Dieke-Meier, F., Fricke, H., Meyer, L., and Rother, C., “Introducing LiDAR Point Cloud-based Object Classification for Safer Apron Operations”, in International Symposium on Enhanced Solutions for Aircraft and Vehicle Surveillance Applications, 2016.
P. Pinggera, Ramos, S., Gehrig, S., Franke, U., Rother, C., and Mester, R., “Lost and found: Detecting small road hazards for self-driving vehicles”, in IEEE International Conference on Intelligent Robots and Systems, 2016, vol. 2016-Novem, pp. 1099–1106.
2017
L. Flothow, “Bubble Characteristics from Breaking Waves in Fresh Water and Simulated Seawater”, Institut für Umweltphysik, Universität Heidelberg, Germany, 2017.
S. Ramos, Gehrig, S., Pinggera, P., Franke, U., and Rother, C., “Detecting unexpected obstacles for self-driving cars: Fusing deep learning and geometric modeling”, in IEEE Intelligent Vehicles Symposium, Proceedings, 2017, pp. 1025–1032.
M. Bautista, Fuchs, P., and Ommer, B., “Learning Where to Drive by Watching Others”, Proceedings of the German Conference Pattern Recognition, vol. 1. Springer-Verlag, Basel, 2017.
2018
D. Fortun, Storath, M., Rickert, D., Weinmann, A., and Unser, M., “Fast Piecewise-Affine Motion Estimation Without Segmentation”, IEEE Transactions on Image Processing, vol. 27 , no. 11, pp. 5612 - 5624, 2018.
W. Erb, Weinmann, A., Ahlborg, M., Brandt, C., Bringout, G., Buzug, T. M., Frikel, J., Kaethner, C., Knopp, T., März, T., Möddel, M., Storath, M., and Weber, A., “Mathematical Analysis of the 1D Model and Reconstruction Schemes for Magnetic Particle Imaging”, Inverse Problems, vol. 34, no. 5, 2018.
2019
J. Kleesiek, Morshuis, J. Nikolas, Isensee, F., Deike-Hofmann, K., Paech, D., Kickingereder, P., Köthe, U., Rother, C., Forsting, M., Wick, W., Bendszus, M., Schlemmer, H. Peter, and Radbruch, A., “Can Virtual Contrast Enhancement in Brain MRI Replace Gadolinium?: A Feasibility Study”, Investigative Radiology, vol. 54, pp. 653–660, 2019.
A. Imle, Kumberger, P., Schnellbächer, N. D., Fehr, J., Carillo-Bustamente, P., Ales, J., Schmidt, P., Ritter, C., Godinez, W. J., Müller, B., Rohr, K., Hamprecht, F. A., Schwarz, U. S., Graw, F., and Fackler, O. T., “Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures”, Nature Communications, vol. 13;10(1), 2019.
A. Imle, Kumberger, P., Schnellbächer, N. D., Fehr, J., Carillo-Bustamente, P., Ales, J., Schmidt, P., Ritter, C., Godinez, W. J., Müller, B., Rohr, K., Hamprecht, F. A., Schwarz, U. S., Graw, F., and Fackler, O. T., “Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures”, Nature Communications, vol. 13;10(1), 2019.
S. I. Friman and Jähne, B., “Investigating SO2 transfer across the air–water interface via LIF”, Exp. Fluids, vol. 60, p. 65, 2019.
E. Fita, “Semi-supervised distance-based segmentation”, Heidelberg University, 2019.

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