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2011
F. O. Kaster, Merkel, B., Nix, O., and Hamprecht, F. A., “An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements”, Computer Science - Research and Development, vol. 26, pp. 65-85, 2011.PDF icon Technical Report (808.16 KB)
B. H. Menze, Kelm, B. Michael, Splitthoff, N., Köthe, U., and Hamprecht, F. A., “On oblique random forests”, in European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings., 2011, pp. 453-469.PDF icon Technical Report (665.33 KB)
B. Andres, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “Probabilistic Image Segmentation with Closedness Constraints”, in ICCV, Proceedings, 2011, pp. 2611 - 2618.PDF icon Technical Report (8.18 MB)
B. Andres, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “Probabilistic Image Segmentation with Closedness Constraints”, in Proceedings of ICCV, 2011.PDF icon Technical Report (2.95 MB)
B. Andres, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “Probabilistic Image Segmentation with Closedness Constraints”, in Proceedings of ICCV, 2011.
M. Hanselmann, Voss, B., Renard, B. Y., Lindner, M., Köthe, U., Kirchner, M., and Hamprecht, F. A., “SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists”, Bioinformatics, vol. 27 (7), pp. 987-993, 2011.PDF icon Technical Report (2.2 MB)
M. Hanselmann, Voss, B., Renard, B. Y., Lindner, M., Köthe, U., Kirchner, M., and Hamprecht, F. A., “SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists”, Bioinformatics, vol. 27 (7), pp. 987-993, 2011.PDF icon Technical Report (2.2 MB)
X. Lou and Hamprecht, F. A., “Structured Learning for Cell Tracking”, in NIPS 2011. Proceedings, 2011, pp. 1296-1304.PDF icon Technical Report (1.41 MB)
L. Maier-Hein, Franz, A. M., Fangerau, M., Schmidt, M., Seitel, A., Mersmann, S., Kilgus, T., Groch, A., Yung, K., Santos, T. R. dos, and Meinzer, H. - P., “Towards mobile augmented reality for on-patient visualization of medical images”, in Bildverarbeitung für die Medizin (2011), 2011, p. 389--393.
B. Michael Kelm, Kaster, F. O., Henning, A., Weber, M. - A., Bachert, P., Bösinger, P., Hamprecht, F. A., and Menze, B. H., “Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images”, NMR in Biomedicine, vol. 25(1), pp. 1-13, 2011.PDF icon Technical Report (1.94 MB)
B. Michael Kelm, Kaster, F. O., Henning, A., Weber, M. - A., Bachert, P., Bösinger, P., Hamprecht, F. A., and Menze, B. H., “Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images”, NMR in Biomedicine, vol. 25(1), pp. 1-13, 2011.PDF icon Technical Report (1.94 MB)
M. Pfannmöller, Flügge, H., Benner, G., Wacker, I., Sommer, C., Hanselmann, M., Schmale, S., Schmidt, H., Hamprecht, F. A., Rabe, T., Kowalsky, W., and Schröder, R., “Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy”, Nano Letters, vol. 11, pp. 3099-3107, 2011.
M. Pfannmöller, Flügge, H., Benner, G., Wacker, I., Sommer, C., Hanselmann, M., Schmale, S., Schmidt, H., Hamprecht, F. A., Rabe, T., Kowalsky, W., and Schröder, R., “Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy”, Nano Letters, vol. 11, pp. 3099-3107, 2011.
2012
B. Andres, Köthe, U., Kröger, T., Helmstaedter, M., Briggmann, K. L., Denk, W., and Hamprecht, F. A., “3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries”, Medical Image Analysis, vol. 16 (2012), pp. 796-805, 2012.PDF icon Technical Report (20.85 MB)
B. Andres, Köthe, U., Kröger, T., Helmstaedter, M., Briggmann, K. L., Denk, W., and Hamprecht, F. A., “3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries”, Medical Image Analysis, vol. 16 (2012), pp. 796-805, 2012.PDF icon Technical Report (20.85 MB)
M. Hanselmann, Röder, J., Köthe, U., Renard, B. Y., Heeren, R. M. A., and Hamprecht, F. A., “Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images”, Analytical Chemistry, vol. 85 (1), pp. 147-155, 2012.PDF icon Technical Report (2.58 MB)
M. Hanselmann, Röder, J., Köthe, U., Renard, B. Y., Heeren, R. M. A., and Hamprecht, F. A., “Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images”, Analytical Chemistry, vol. 85 (1), pp. 147-155, 2012.PDF icon Technical Report (2.58 MB)
M. Hanselmann, Röder, J., Köthe, U., Renard, B. Y., Heeren, R. M. A., and Hamprecht, F. A., “Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images”, Analytical Chemistry, vol. 85 (1), pp. 147-155, 2012.PDF icon Technical Report (2.58 MB)
J. Röder, Kunzmann, K., Nadler, B., and Hamprecht, F. A., “Active Learning with Distributional Estimates”, UAI 2012. Proceedings, pp. 715-725, 2012.PDF icon Technical Report (267.67 KB)
C. M. Zechmann, Menze, B. H., Kelm, B. Michael, Zamecnik, P., Ikinger, U., Waldherr, R., Delorme, S., Hamprecht, F. A., and Bachert, P., “Automated vs. manual pattern recognition of 3D 1H MRSI data of patients with prostate cancer”, Academic Radiology, vol. 19, 6, pp. 675-684, 2012.
B. X. Kausler, Schiegg, M., Andres, B., Lindner, M., Köthe, U., Leitte, H., Wittbrodt, J., Hufnagel, L., and Hamprecht, F. A., “A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness”, in ECCV 2012. Proceedings, 2012, vol. 7574, pp. 144-157.PDF icon Technical Report (809.07 KB)
B. X. Kausler, Schiegg, M., Andres, B., Lindner, M., Köthe, U., Leitte, H., Wittbrodt, J., Hufnagel, L., and Hamprecht, F. A., “A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness”, in ECCV 2012. Proceedings, 2012, vol. 7574, pp. 144-157.PDF icon Technical Report (809.07 KB)
J. Funke, Andres, B., Hamprecht, F. A., Cardona, A., and Cook, M., “Efficient Automatic 3D-Reconstruction of Branching Neurons from EM Data”, CVPR 2012. Proceedings, pp. 1004-1011, 2012.PDF icon Technical Report (1.64 MB)
M. Erz, Mischler, W., Trein, J., Lin, Z., Lay, R., and Jähne, B., “Erweiterte Schärfentiefe mittels Scheimpflug-Bildaufnahme und Bildfusion”, in Forum Bildverarbeitung, 2012, p. 1--12.
B. Andres, Kröger, T., Briggmann, K. L., Denk, W., Norogod, N., Knott, G. W., Köthe, U., and Hamprecht, F. A., “Globally Optimal Closed-Surface Segmentation for Connectomics”, in ECCV 2012. Proceedings, Part 3, 2012, pp. 778-791.PDF icon Technical Report (2.72 MB)
R. Nair, Meister, S., Lambers, M., Balda, M., Hofmann, H., Kolb, A., Kondermann, D., and Jähne, B., “Ground truth for evaluating time of flight imaging”, Time-of-Flight and Depth Imaging. Sensors, Algorithms, and Applications, vol. 8200. Springer, p. 52--74, 2012.
B. Andres, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models”, in Computer Vision - {ECCV} 2012 - 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part {VII}, 2012.PDF icon Technical Report (446.28 KB)
B. Andres, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models”, in ECCV 2012, 2012.PDF icon Technical Report (532.64 KB)
B. Andres, Kappes, J. Hendrik, Beier, T., Köthe, U., and Hamprecht, F. A., “The Lazy Flipper: Efficient Depth-limited Exhaustive Search in Discrete Graphical Models”, in ECCV 2012, 2012.
L. Fiaschi, Nair, R., Köthe, U., and Hamprecht, F. A., “Learning to Count with Regression Forest and Structured Labels”, ICPR 2012. Proceedings, pp. 2685-2688, 2012.PDF icon Technical Report (3.66 MB)
X. Lou and Hamprecht, F. A., “Learning to Segment Dense Cell Nuclei with Shape Prior”, CVPR 2012. Proceedings, pp. 1012-1018, 2012.PDF icon Technical Report (2.66 MB)
C. Sommer, Fiaschi, L., Hamprecht, F. A., and Gerlich, D., “Learning-based Mitotic Cell Detection in Histopathological Images”, ICPR 2012. Proceedings, pp. 2306-2309, 2012.PDF icon Technical Report (1.96 MB)
E. - A. Horvát, Hanselmann, M., Hamprecht, F. A., and Zweig, K. A., “One plus one makes three (for social networks)”, PLoS ONE, vol. 4,7, 2012.
E. - A. Horvát, Hanselmann, M., Hamprecht, F. A., and Zweig, K. A., “One plus one makes three (for social networks)”, PLoS ONE, vol. 4,7, 2012.
E. - A. Horvát, Hanselmann, M., Hamprecht, F. A., and Zweig, K. A., “One plus one makes three (for social networks)”, PLoS ONE, vol. 4,7, 2012.

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