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2015

M. Schiegg, Hanslovsky, P., Haubold, C., Köthe, U., Hufnagel, L., and Hamprecht, F. A., “Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell”, Bioinformatics, vol. 31, no. 6, pp. 948-956, 2015.

Technical Report (534.29 KB)

M. Schiegg, Hanslovsky, P., Haubold, C., Köthe, U., Hufnagel, L., and Hamprecht, F. A., “Graphical Model for Joint Segmentation and Tracking of Multiple Dividing Cell”, Bioinformatics, vol. 31, no. 6, pp. 948-956, 2015.

Technical Report (534.29 KB)

K. Honauer, Maier-Hein, L., and Kondermann, D., “The HCI Stereo Metrics: Geometry-Aware Performance Analysis of Stereo Algorithms”, in The IEEE International Conference on Computer Vision (ICCV), 2015.

N. Krasowski, Beier, T., Knott, G. W., Köthe, U., Hamprecht, F. A., and Kreshuk, A., “Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors”, in 12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015, 2015, pp. 536-539.

Technical Report (2.25 MB)

J. Funke, Hamprecht, F. A., and Zhang, C., “Learning to Segment: Training Hierarchical Segmentation under a Topological Loss”, in MICCAI. Proceedings, Part III, 2015, vol. 9351, pp. 268-275.

Technical Report (2.92 MB)

E. Mesarchaki, Kräuter, C., Krall, K. Ellen, Bopp, M., Helleis, F., Williams, J., and Jähne, B., “Measuring air–sea gas-exchange velocities in a large-scale annular wind–wave tank”, Ocean Sci., vol. 11, p. 121--138, 2015.

J. Kappes, Swoboda, P., Savchynskyy, B., Hazan, T., and Schnörr, C., “Probabilistic Correlation Clustering and Image Partitioning Using Perturbed Multicuts”, in Proc. SSVM, 2015.

J. Hendrik Kappes, Swoboda, P., Savchynskyy, B., Hazan, T., and Schnörr, C., “Probabilistic correlation clustering and image partitioning using perturbed Multicuts”, in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2015, vol. 9087, pp. 231–242.

J. H. Kappes, Swoboda, P., Savchynskyy, B., Hazan, T., and Schnörr, C., “Probabilistic Correlation Clustering and Image Partitioning Using Perturbed Multicuts”, in Proc.~SSVM, 2015.

Technical Report (1.1 MB)

M. Schiegg, Heuer, B., Haubold, C., Wolf, S., Köthe, U., and Hamprecht, F. A., “Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models”, in ISBI. Proceedings, 2015, pp. 394-398.

Technical Report (648.55 KB)

M. Schiegg, Heuer, B., Haubold, C., Wolf, S., Köthe, U., and Hamprecht, F. A., “Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models”, in ISBI. Proceedings, 2015, pp. 394-398.

Technical Report (648.55 KB)

M. Schiegg, Heuer, B., Haubold, C., Wolf, S., Köthe, U., and Hamprecht, F. A., “Proof-reading Guidance in Cell Tracking by Sampling from Tracking-by-assignment Models”, in ISBI. Proceedings, 2015, pp. 394-398.

Technical Report (648.55 KB)

D. Kondermann, Nair, R., Meister, S., Mischler, W., Güssefeld, B., Honauer, K., Hofmann, S., Brenner, C., and Jähne, B., “Stereo Ground Truth with Error Bars”, in Computer Vision – ACCV 2014: 12th Asian Conference on Computer Vision, Singapore, Singapore, November 1-5, 2014, Revised Selected Papers, Part V, Cham: Springer International Publishing, 2015, pp. 595–610.

D. Kondermann, Nair, R., Meister, S., Mischler, W., Güssefeld, B., Honauer, K., Hofmann, S., Brenner, C., and Jähne, B., “Stereo Ground Truth with Error Bars”, in Computer Vision – ACCV 2014: 12th Asian Conference on Computer Vision, Singapore, Singapore, November 1-5, 2014, Revised Selected Papers, Part V, Cham: Springer International Publishing, 2015, pp. 595–610.

C. Cali, Baghabra, J., Boges, D. J., Holst, G. R., Kreshuk, A., Hamprecht, F. A., Srinivasan, M., Lehväslaiho, H., and Magistretti, P. J., “Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues”, Journal of Comparative Neurology, vol. 524, pp. 23-38, 2015.

C. Cali, Baghabra, J., Boges, D. J., Holst, G. R., Kreshuk, A., Hamprecht, F. A., Srinivasan, M., Lehväslaiho, H., and Magistretti, P. J., “Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues”, Journal of Comparative Neurology, vol. 524, pp. 23-38, 2015.

J. P. Kauppi, Kandemir, M., Saarinen, V. M., Hirvenkari, L., Parkkonen, L., Klami, A., Hari, R., and Kaski, S., “Towards brain-activity-controlled information retrieval: Decoding image relevance from MEG signals”, NeuroImage, vol. 112, pp. 288-298, 2015.

Technical Report (2.39 MB)

J. P. Kauppi, Kandemir, M., Saarinen, V. M., Hirvenkari, L., Parkkonen, L., Klami, A., Hari, R., and Kaski, S., “Towards brain-activity-controlled information retrieval: Decoding image relevance from MEG signals”, NeuroImage, vol. 112, pp. 288-298, 2015.

Technical Report (2.39 MB)

A. Kreshuk, Funke, J., Cardona, A., and Hamprecht, F. A., “Who is talking to whom: synaptic partner detection in anisotropic volumes of insect brain”, MICCAI. Proceedings, vol. LNCS 9349. Springer, pp. 661-668, 2015.

Technical Report (2.14 MB)

2014

X. Lou, Schiegg, M., and Hamprecht, F. A., “Active Structured Learning for Cell Tracking: Algorithm, Framework and Usability”, IEEE Transactions on Medical Imaging, vol. 33 (4), pp. 849-860, 2014.

Technical Report (6.84 MB)

M. Horn, “Arriving at Z / f”, pp. 1–2, 2014.

T. Kröger, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “Asymmetric Cuts: Joint Image Labeling and Partitioning”, in Pattern Recognition - 36th German Conference, {GCPR} 2014, Münster, Germany, September 2-5, 2014, Proceedings, 2014.

Technical Report (3.46 MB)

T. Kröger, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “Asymmetric Cuts: Joint Image Labeling and Partitioning”, in 36th German Conference on Pattern Recognition, 2014.

A. - S. Wahl, Omlor, W., Rubio, J. C., Chen, J. L., Zheng, H., Schröter, A., Gullo, M., Weinmann, O., Kobayashi, K., Helmchen, F., Ommer, B., and Schwab, M. E., “Asynchronous Therapy Restores Motor Control by Rewiring of the Rat Corticospinal Tract after Stroke”, Science, vol. 344, p. 1250--1255, 2014.

B. F. Tek, Kröger, T., Mikula, S., and Hamprecht, F. A., “Automated Cell Nucleus Detection for Large-Volume Electron Microscopy of Neural Tissue”, in ISBI. Proceedings, 2014, pp. 69-72.

Technical Report (533.92 KB)

A. Kreshuk, Köthe, U., Pax, E., Bock, D. D., and Hamprecht, F. A., “Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks”, PLoS ONE, vol. 9, p. 2, 2014.

Technical Report (16.66 MB)

C. Zhang, Yarkony, J., and Hamprecht, F. A., “Cell detection and segmentation using correlation clustering”, in MICCAI. Proceedings, 2014, pp. 9-16.

Technical Report (8.06 MB)

J. H. Kappes, Andres, B., Hamprecht, F. A., Schnörr, C., Nowozin, S., Batra, D., Kim, S., Kausler, B. X., Kröger, T., Lellmann, J., Komodakis, N., Savchynskyy, B., and Rother, C., “A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems”, CoRR, vol. abs/1404.0533, 2014.

Technical Report (3.32 MB)

J. H. Kappes, Andres, B., Hamprecht, F. A., Schnörr, C., Nowozin, S., Batra, D., Kim, S., Kausler, B. X., Kröger, T., Lellmann, J., Komodakis, N., Savchynskyy, B., and Rother, C., “A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems”, CoRR, 2014.

M. Kandemir and Hamprecht, F. A., “Computer-aided diagnosis from weak supervision: A benchmarking study”, Computerized Medical Imaging and Graphics, vol. 42, pp. 44-50, 2014.

Technical Report (4.28 MB)

L. Maier-Hein, Mersmann, S., Kondermann, D., Stock, C., Kenngott, H., Sanchez, A., Wagner, M., Preukschas, A., Wekerle, A. - L., Helfert, S., Bodenstedt, S., and Speidel, S., “Crowdsourcing for reference correspondence generation in endoscopic images”, in MICCAI, 2014.

T. Beier, Kröger, T., Kappes, J. H., Köthe, U., and Hamprecht, F. A., “Cut, Glue and Cut: A Fast, Approximate Solver for Multicut Partitioning”, in 2014 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2014, Columbus, OH, USA, June 23-28, 2014, 2014.

Technical Report (10.06 MB)

C. Decker and Hamprecht, F. A., “Detecting individual body parts improves mouse behavior classification”, in Workshop on visual observation and analysis of Vertebrate And Insect Behavior (VAIB), 22nd International Conference on Pattern Recognition (ICPR). Proceedings, 2014.

Technical Report (1.48 MB)

E. Eyjolfsdottir, Branson, S., Burgos-Artizzu, X. P., Hoopfer, E. D., Schor, J., Anderson, D. J., and Perona, P., “Detection of social actions in fruit flies”, Lecture Notes in Computer Science, vol. 8690, pp. 772–787, 2014.

M. Kandemir, Feuchtinger, A., Walch, A., and Hamprecht, F. A., “Digital Pathology: Multiple instance learning can detect Barrett'scancer”, ISBI. Proceedings. pp. 1348-1351, 2014.

Technical Report (2.86 MB)

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