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2014
M. Kandemir, Zhang, C., and Hamprecht, F. A., “Empowering multiple instance histopathology cancer diagnosis by cell graphs”, in MICCAI. Proceedings, 2014, vol. 8674, pp. 228-235.PDF icon Technical Report (1.76 MB)
M. Kandemir, Rubio, J. C., Schmidt, U., Wojek, C., Welbl, J., Ommer, B., and Hamprecht, F. A., “Event Detection by Feature Unpredictability in Phase-Contrast Videos of Cell Cultures”, in Medical Image Computing and Computer-Assisted Intervention, 2014, p. 154--161.PDF icon Technical Report (2 MB)
M. Kandemir, Rubio, J. C., Schmidt, U., Welbl, J., Ommer, B., and Hamprecht, F. A., “Event Detection by Feature Unpredictability in Phase-Contrast Videos of Cell Cultures”, in MICCAI. Proceedings, 2014, pp. 154-161.PDF icon Paper (2 MB)
R. Lindner, Lou, X., Reinstein, J., Shoeman, R. L., Hamprecht, F. A., and Winkler, A., “Hexicon 2: Automated Processing of Hydrogen-Deuterium Exchange Mass Spectrometry Data with Improved Deuteration Distribution Estimation”, Journal of The American Society for Mass Spectrometry, vol. 25, pp. 1018-1028, 2014.PDF icon Technical Report (2.1 MB)
M. Hornáček, Besse, F., Kautz, J., Fitzgibbon, A., and Rother, C., “Highly overparameterized optical flow using PatchMatch belief propagation”, in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2014, vol. 8691 LNCS, pp. 220–234.
J. Kleesiek, Biller, A., Urban, G., Köthe, U., Bendszus, M., and Hamprecht, F. A., “ilastik for Multi-modal Brain Tumor Segmentation”, in MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, 3rdplace, 2014, pp. 12-17.PDF icon Technical Report (405.91 KB)
M. Kandemir and Hamprecht, F. A., “Instance Label Prediction by Dirichlet Process Multiple Instance Learning”, in UAI. Proceedings, 2014.PDF icon Technical Report (4.26 MB)
M. Hoai, Torresani, L., De La Torre, F., and Rother, C., “Learning discriminative localization from weakly labeled data”, in Pattern Recognition, 2014, vol. 47, pp. 1523–1534.
E. Mesarchaki, Kräuter, C., Krall, K. Ellen, Bopp, M., Helleis, F., Williams, J., and Jähne, B., “Measuring air-sea gas exchange velocities in a large scale annular wind-wave tank”, Ocean Sci. Discuss., vol. 11, p. 1643--1689, 2014.
G. Urban, Bendszus, M., Hamprecht, F. A., and Kleesiek, J., “Multi-modal Brain Tumor Segmentation using Deep Convolutional NeuralNetworks”, in MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, winningcontribution, 2014, pp. 31-35.
C. N. Straehle, Kandemir, M., Köthe, U., and Hamprecht, F. A., “Multiple instance learning with response-optimized random forests”, in ICPR. Proceedings, 2014, pp. 3768 - 3773.PDF icon Technical Report (296.66 KB)
J. Yarkony, Beier, T., Baldi, P., and Hamprecht, F. A., “Parallel Multicut Segmentation via Dual Decomposition”, in New Frontiers in Mining Complex Patterns - Third International Workshop, {NFMCP} 2014, Held in Conjunction with {ECML-PKDD} 2014, Nancy, France, September 19, 2014, Revised Selected Papers, 2014.
J. Esparza, Vepa, L., Helmle, M., and Jähne, B., “Registration of a multi-camera system with a 3D laser range finder”, in 9th Workshop Driver Assistance Systems (FAS2014), 26.-28.03.2014, Walting, 2014, p. 37--46.
X. He, Wang, H., Zhang, F., Wang, G., and Zhou, K., “Robust Simulation of Small-Scale Thin Features in SPH-based Free Surface Flows”, Life.Kunzhou.Net, vol. 1, pp. 1–8, 2014.
B. Maco, Cantoni, M., Holtmaat, A., Kreshuk, A., Hamprecht, F. A., and Knott, G. W., “Semiautomated Correlative 3D Electron Microscopy of In Vivo Imaged Axons and Dendrites”, Nature Protocols, vol. 9, pp. 1354-1366, 2014.PDF icon Technical Report (2.01 MB)
B. Maco, Cantoni, M., Holtmaat, A., Kreshuk, A., Hamprecht, F. A., and Knott, G. W., “Semiautomated Correlative 3D Electron Microscopy of In Vivo Imaged Axons and Dendrites”, Nature Protocols, vol. 9, pp. 1354-1366, 2014.PDF icon Technical Report (2.01 MB)
A. Drory, Haubold, C., Avidan, S., and Hamprecht, F. A., “Semi-Global Matching: A Principled Derivation in Terms of Message Passing”, in GCPR. Proceedings, 2014, pp. 43-53.PDF icon Technical Report (2.6 MB)
A. Drory, Haubold, C., Avidan, S., and Hamprecht, F. A., “Semi-Global Matching: A Principled Derivation in Terms of Message Passing”, in GCPR. Proceedings, 2014, pp. 43-53.PDF icon Technical Report (2.6 MB)
U. Köthe, Herrmannsdörfer, F., Kats, I., and Hamprecht, F. A., “SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy”, Histochemistry and Cell Biology, vol. 141, pp. 613-627, 2014.PDF icon Technical Report (2.29 MB)
U. Köthe, Herrmannsdörfer, F., Kats, I., and Hamprecht, F. A., “SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy”, Histochemistry and Cell Biology, vol. 141, pp. 613-627, 2014.PDF icon Technical Report (2.29 MB)
F. Diego and Hamprecht, F. A., “Sparse Space-Time Deconvolution for Calcium Image Analysis”, in NIPS. Proceedings, 2014, pp. 64-72.PDF icon Technical Report (5.27 MB)
M. Hornáček, Fitzgibbon, A., and Rother, C., “SphereFlow: 6 DoF scene flow from RGB-D pairs”, in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2014, pp. 3526–3533.
D. Kondermann, Nair, R., Meister, S., Mischler, W., Güssefeld, B., Hofmann, S., Brenner, C., and Jähne, B., “Stereo ground truth with error bars”, in Asian Conference on Computer Vision, ACCV 2014, 2014.
X. Lou, Kloft, M., Rätsch, G., and Hamprecht, F. A., “Structured Learning from Cheap Data”, Advanced Structured Prediction. The MIT Press, 2014.PDF icon Technical Report (8.35 MB)
J. Esparza, Helmle, M., and Jähne, B., “Towards surround stereo vision: analysis of a new surround view camera configuration for driving asistance applications”, in 17th International Conference on Intelligent Transportation Systems (ITSC 2014), 2014.
L. Fiaschi, Diego, F., Grosser, K. - H., Schiegg, M., Köthe, U., Zlatic, M., and Hamprecht, F. A., “Tracking indistinguishable translucent objects over time using weakly supervised structured learning”, in CVPR. Proceedings, 2014, pp. 2736 - 2743.PDF icon Technical Report (1.47 MB)
S. Lenor, Martini, J., Jähne, B., Stopper, U., Weber, S., and Ohr, F., “Tracking-based visibility estimation”, in Pattern Recognition, 36th German Conference, GCPR 2014, Münster, Germany, September 2-5, 2014, 2014, vol. 8753, p. 365--376.
J. Esparza, Helmle, M., and Jähne, B., “Wide base stereo with fisheye optics: a robust approach for 3D reconstruction in driving assistance”, in Pattern Recognition, 36th German Conference, GCPR 2014, Münster, Germany, September 2-5, 2014, 2014, vol. 8753, p. 342--353.
J. Esparza, Helmle, M., and Jähne, B., “Wide base stereo with fisheye optics: a robust approach for 3D reconstruction in driving assistance”, in Pattern Recognition, 36th German Conference, GCPR 2014, Münster, Germany, September 2-5, 2014, 2014, vol. 8753, p. 342--353.
C. Zhang, Huber, F., Knop, M., and Hamprecht, F. A., “Yeast Cell Detection and Segmentation in Bright Field Microscopy”, in ISBI. Proceedings, 2014, pp. 1267-1270.PDF icon Technical Report (4.13 MB)
C. Zhang, Huber, F., Knop, M., and Hamprecht, F. A., “Yeast Cell Detection and Segmentation in Bright Field Microscopy”, in ISBI. Proceedings, 2014, pp. 1267-1270.PDF icon Technical Report (4.13 MB)
2013
B. Jähne, “625 Jahre Ruperto Carola und 25 Jahre Bildverarbeitung”, Universität Heidelberg. Menschen, Lebenswege, Forschung, vol. 55. Gesellschaft der Freunde Universität Heidelberg e. V., p. 71--73, 2013.
P. Hanslovsky, “Advanced Cell Tacking-by-Assignment”, University of Heidelberg, 2013.
F. Diego, Reichinnek, S., Both, M., and Hamprecht, F. A., “Automated Identification of Neuronal Activity from Calcium Imaging by Sparse Dictionary Learning”, ISBI 2013. Proceedings, pp. 1058-1061, 2013.PDF icon Technical Report (2.82 MB)
R. Mikut, Dickmeis, T., Driever, W., Geurts, P., Hamprecht, F. A., Kausler, B. X., Ledesma-Carbayo, M., Marée, R., Mikula, K., Pantazis, P., Ronneberger, O., Santos, A., and Stotzka, R., “Automated Processing of Zebrafish Imaging Data: A Survey”, Zebrafish, vol. 10 (3), 2013.PDF icon Technical Report (1.73 MB)

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