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2013
C. N. Straehle, Peter, S., Köthe, U., and Hamprecht, F. A., “K-smallest Spanning Tree Segmentations”, in German Conference on Pattern Recognition (DAGM/GCPR). Proceedings, 2013, pp. 375-384.PDF icon Technical Report (1.18 MB)
2014
A. Kreshuk, Köthe, U., Pax, E., Bock, D. D., and Hamprecht, F. A., “Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks”, PLoS ONE, vol. 9, p. 2, 2014.PDF icon Technical Report (16.66 MB)
S. Petra and Schnörr, C., “Average Case Recovery Analysis of Tomographic Compressive Sensing”, Linear Algebra and its Applications, vol. 441, pp. 168-198, 2014.PDF icon Technical Report (1.85 MB)
L. Maier-Hein, Mersmann, S., Kondermann, D., Stock, C., Kenngott, H., Sanchez, A., Wagner, M., Preukschas, A., Wekerle, A. - L., Helfert, S., Bodenstedt, S., and Speidel, S., “Crowdsourcing for reference correspondence generation in endoscopic images”, in MICCAI, 2014.
E. Eyjolfsdottir, Branson, S., Burgos-Artizzu, X. P., Hoopfer, E. D., Schor, J., Anderson, D. J., and Perona, P., “Detection of social actions in fruit flies”, Lecture Notes in Computer Science, vol. 8690, pp. 772–787, 2014.
E. Eyjolfsdottir, Branson, S., Burgos-Artizzu, X. P., Hoopfer, E. D., Schor, J., Anderson, D. J., and Perona, P., “Detection of social actions in fruit flies”, Lecture Notes in Computer Science, vol. 8690, pp. 772–787, 2014.
A. Denitiu, Petra, S., Schnörr, C., and Schnörr, C., “An Entropic Perturbation Approach to TV-Minimization for Limited-Data Tomography”, in Discrete Geometry for Computer Imagery (DGCI) 2014, 2014, p. 262--274.PDF icon Technical Report (894.83 KB)
A. Denitiu, Petra, S., Schnörr, C., and Schnörr, C., “An Entropic Perturbation Approach to TV-Minimization for Limited-Data Tomography”, in Discrete Geometry for Computer Imagery (DGCI) 2014, 2014, pp. 262–274.
F. Becker, Petra, S., and Schnörr, C., “Optical Flow”, Handbook of Mathematical Methods in Imaging. Springer, 2014.
F. Jug, Pietzsch, T., Kainmüller, D., Funke, J., Kaiser, M., van Nimwegen, E., Rother, C., and Myers, G., “Optimal joint segmentation and tracking of escherichia coli in the mother machine”, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 8677, pp. 25–36, 2014.
A. Denitiu, Petra, S., Schnörr, C., and Schnörr, C., “Phase Transitions and Cosparse Tomographic Recovery of Compound Solid Bodies from Few Projections”, Fundamenta Informaticae, vol. 135, p. 73--102, 2014.PDF icon Technical Report (2.24 MB)
A. Denitiu, Petra, S., Schnörr, C., and Schnörr, C., “Phase Transitions and Cosparse Tomographic Recovery of Compound Solid Bodies from Few Projections”, Fundamenta Informaticae, vol. 135, pp. 73–102, 2014.
2015
E. Bodnariuc, Gurung, A., Petra, S., and Schnörr, C., “Adaptive Dictionary-Based Spatio-temporal Flow Estimation for Echo PIV”, in Proc.~EMMCVPR, 2015, vol. 8932, p. 378--391.PDF icon Technical Report (951.37 KB)
E. Bodnariuc, Gurung, A., Petra, S., and Schnörr, C., “Adaptive Dictionary-Based Spatio-temporal Flow Estimation for Echo PIV”, in EMMCVPR, 2015.
N. Krah, Testa, M., Brons, S., Jäkel, O., Parodi, K., Voss, B., and Rinaldi, I., “An advanced image processing method to improve the spatial resolution of ion radiographies”, Physics in Medicine and Biology, vol. 60, p. 8525, 2015.
A. Kreshuk, Walecki, R., Köthe, U., Gierthmühlen, M., Plachta, D., Genoud, C., Haastert-Talini, K., and Hamprecht, F. A., “Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves”, Journal of Microscopy, vol. 259 (2), pp. 143-154, 2015.
S. Zheng, Prisacariu, V. Adrian, Averkiou, M., Cheng, M. Ming, Mitra, N. J., Shotton, J., Torr, P. H. S., and Rother, C., “Object proposals estimation in depth image using compact 3D shape manifolds”, in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2015, vol. 9358, pp. 196–208.
N. J. Mitra, Stam, J., Xu, K., Cheng, M. - M., Prisacariu, V. Adrian, Zheng, S., Torr, P. H. S., and Rother, C., “Pacific Graphics 2015 DenseCut: Densely Connected CRFs for Realtime GrabCut”, vol. 34, 2015.
S. Peter, “Spatio-Temporal Motif Deconvolution for Calcium Image Analysis”, University of Heidelberg, 2015.
J. H. Kappes, Petra, S., Schnörr, C., and Zisler, M., “TomoGC: Binary Tomography by Constrained Graph Cuts”, in Proc.~GCPR, 2015.PDF icon Technical Report (2.46 MB)
J. H. Kappes, Petra, S., Schnörr, C., and Zisler, M., “TomoGC: Binary Tomography by Constrained Graph Cuts”, in Proc. GCPR, 2015.
J. P. Kauppi, Kandemir, M., Saarinen, V. M., Hirvenkari, L., Parkkonen, L., Klami, A., Hari, R., and Kaski, S., “Towards brain-activity-controlled information retrieval: Decoding image relevance from MEG signals”, NeuroImage, vol. 112, pp. 288-298, 2015.PDF icon Technical Report (2.39 MB)
2016
C. Proß, “Analysis of the Fetch Dependency of the Slope of Wind-Water Waves”, Institut für Umweltphysik, Universität Heidelberg, Germany, 2016.
F. Aström, Petra, S., Schmitzer, B., and Schnörr, C., “The Assignment Manifold: A Smooth Model for Image Labeling”, in Proc. 2nd Int. Workshop on Differential Geometry in Computer Vision and Machine Learning (DIFF-CVML'16; oral presentation; Grenander best paper award), 2016.
C. Pape, “Automatic Segmentation of Neurites from Anisotropic EM-Imaging”, University of Heidelberg, 2016.
T. Prange, “Automatic Segmentation of Neurons in Electron Microscopy Data with Membrane Defects”, University of Heidelberg, 2016.
M. Zisler, Petra, S., Schnörr, C., and Schnörr, C., “Discrete Tomography by Continuous Multilabeling Subject to Projection Constraints”, in Proc. GCPR, 2016.
F. Aström, Petra, S., Schmitzer, B., and Schnörr, C., “A Geometric Approach to Image Labeling”, in Proc. ECCV, 2016.
F. Aström, Petra, S., Schmitzer, B., and Schnörr, C., “Image Labeling by Assignment”. 2016.
E. Meijering, Carpenter, A. E., Peng, H., Hamprecht, F. A., and Olivo-Marin, J., “Imagining the future of bioimage analysis”, Nature Biotechnology, vol. 34, no. 12, pp. 1250-1255, 2016.PDF icon Technical Report (924.57 KB)
P. Pinggera, Ramos, S., Gehrig, S., Franke, U., Rother, C., and Mester, R., “Lost and found: Detecting small road hazards for self-driving vehicles”, in IEEE International Conference on Intelligent Robots and Systems, 2016, vol. 2016-Novem, pp. 1099–1106.
M. Zisler, Kappes, J. H., Schnörr, C., Petra, S., and Schnörr, C., “Non-Binary Discrete Tomography by Continuous Non-Convex Optimization”, IEEE Comp. Imaging, vol. 2, pp. 335-347, 2016.
E. Bodnariuc, Petra, S., Poelma, C., and Schnörr, C., “Parametric Dictionary-Based Velocimetry for Echo PIV”, in Proc. CGPR, 2016.
E. Bodnariuc, Petra, S., Poelma, C., and Schnörr, C., “Parametric Dictionary-Based Velocimetry for Echo PIV”, in Proc. CGPR, 2016.
E. Bodnariuc, Schiffner, M. F., Petra, S., and Schnörr, C., “Plane Wave Acoustic Superposition for Fast Ultrasound Imaging”, International Ultrasonics Symposium. 2016.

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