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Publications

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Author Title Type [ Year(Desc)]
Filters: Author is B. Y. Renard  [Clear All Filters]
2007
B. Y. Renard, “An Improved Method for Peak Identification in Proteomic Mass Spectrometry Data”, University of Heidelberg, 2007.
2008
M. Hanselmann, Kirchner, M., Renard, B. Y., Amstalden, E. R., Glunde, K., Heeren, R. M. A., and Hamprecht, F. A., “Concise Representation of MS Images by Probabilistic Latent Semantic Analysis”, Analytical Chemistry, vol. 80, pp. 9649-9658, 2008.PDF icon Technical Report (3.91 MB)
B. Y. Renard, Kirchner, M., Steen, H., Steen, J. A. J., and Hamprecht, F. A., “NITPICK: Peak Identification for Mass Spectrometry Data”, BMC Bioinformatics, vol. 9, p. 355, 2008.PDF icon Technical Report (643.89 KB)
2009
N. Ozlu, Monigatti, F., Renard, B. Y., Field, C. M., Steen, H., Mitchison, T. J., and Steen, J. J., “Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition”, Molecular & Cellular Proteomics, 2009.
M. Hanselmann, Köthe, U., Renard, B. Y., Kirchner, M., Heeren, R. M. A., and Hamprecht, F. A., “Multivariate Watershed Segmentation of Compositional Data”, in Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press, 2009, vol. 5810, pp. 180-192.PDF icon Technical Report (1.25 MB)
M. Hanselmann, Köthe, U., Kirchner, M., Renard, B. Y., Amstalden, E. R., Glunde, K., Heeren, R. M. A., and Hamprecht, F. A., “Towards Digital Staining using Imaging Mass Spectrometry and Random Forests”, Journal of Proteome Research, vol. 8, pp. 3558-3567, 2009.PDF icon Technical Report (1.47 MB)
B. Y. Renard, Kirchner, M., Monigatti, F., Ivanov, A. R., Rappsilber, J., Winter, D., Steen, J. A. J., Hamprecht, F. A., and Steen, H., “When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing”, Proteomics, vol. 9, pp. 4978-4984, 2009.PDF icon Technical Report (901.78 KB)
2010
M. Kirchner, Renard, B. Y., Köthe, U., Pappin, D. J., Hamprecht, F. A., Steen, J. A. J., and Steen, H., “Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments”, Bioinformatics, vol. 26 (1), pp. 77-83, 2010.PDF icon Technical Report (380.19 KB)
X. Lou, Kirchner, M., Renard, B. Y., Köthe, U., Graf, C., Lee, C., Steen, J. A. J., Steen, H., Mayer, M. P., and Hamprecht, F. A., “Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments”, Bioinformatics, vol. 26(12), pp. 1535-1541, 2010.PDF icon Technical Report (518.01 KB)
B. Y. Renard, Timm, W., Kirchner, M., Steen, J. A. J., Hamprecht, F. A., and Steen, H., “Estimating the Confidence of Peptide Identifications without Decoy Databases”, Analytical Chemistry, pp. 4314-4318, 2010.PDF icon Technical Report (619.11 KB)
B. Y. Renard, “Robust Methods for the Proteomic Data Analysis Pipeline”. University of Heidelberg, 2010.
2011
M. Hanselmann, Voss, B., Renard, B. Y., Lindner, M., Köthe, U., Kirchner, M., and Hamprecht, F. A., “SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists”, Bioinformatics, vol. 27 (7), pp. 987-993, 2011.PDF icon Technical Report (2.2 MB)
2012
M. Hanselmann, Röder, J., Köthe, U., Renard, B. Y., Heeren, R. M. A., and Hamprecht, F. A., “Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images”, Analytical Chemistry, vol. 85 (1), pp. 147-155, 2012.PDF icon Technical Report (2.58 MB)
B. Y. Renard, Xu, B., Kirchner, M., Zickmann, F., Winter, D., Korten, S., Brattig, N., Tzur, A., Hamprecht, F. A., and Steen, H., “Overcoming species boundaries in peptide identification with BICEPS”, Molecular and Cellular Proteomics, vol. 11, 2012.PDF icon Technical Report (444.6 KB)