Publications | Heidelberg Collaboratory for Image Processing (HCI)

2017

S. Peter, Diego, F., Hamprecht, F. A., and Nadler, B., “Cost-efficient Gradient Boosting”, NIPS, poster. 2017.

2015

M. Kandemir and Hamprecht, F. A., “Cell event detection in phase-contrast microscopy sequences from few annotations”, MICCAI. Proceedings, vol. LNCS 9351. Springer, pp. 316-323, 2015.

Technical Report (564.69 KB)

J. H. Kappes, Andres, B., Hamprecht, F. A., Schnörr, C., Nowozin, S., Batra, D., Kim, S., Kausler, B. X., Kröger, T., Lellmann, J., Komodakis, N., Savchynskyy, B., and Rother, C., “A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems”, International Journal of Computer Vision, vol. 115, pp. 155–184, 2015.

J. H. Kappes, Andres, B., Hamprecht, F. A., Schnörr, C., Nowozin, S., Batra, D., Kim, S., Kausler, B. X., Kröger, T., Lellmann, J., Komodakis, N., Savchynskyy, B., and Rother, C., “A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems”, Int.~J.~Comp.~Vision, 2015.

Technical Report (5.12 MB)

J. H. Kappes, Andres, B., Hamprecht, F. A., Schnörr, C., Nowozin, S., Batra, D., Kim, S., Kausler, B. X., Kröger, T., Lellmann, J., Komodakis, N., Savchynskyy, B., and Rother, C., “A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems”, International Journal of Computer Vision, pp. 1-30, 2015.

Technical Report (1.5 MB)

2014

C. Zhang, Yarkony, J., and Hamprecht, F. A., “Cell detection and segmentation using correlation clustering”, in MICCAI. Proceedings, 2014, pp. 9-16.

Technical Report (8.06 MB)

J. H. Kappes, Andres, B., Hamprecht, F. A., Schnörr, C., Nowozin, S., Batra, D., Kim, S., Kausler, B. X., Kröger, T., Lellmann, J., Komodakis, N., Savchynskyy, B., and Rother, C., “A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems”, CoRR, vol. abs/1404.0533, 2014.

Technical Report (3.32 MB)

J. H. Kappes, Andres, B., Hamprecht, F. A., Schnörr, C., Nowozin, S., Batra, D., Kim, S., Kausler, B. X., Kröger, T., Lellmann, J., Komodakis, N., Savchynskyy, B., and Rother, C., “A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems”, CoRR, 2014.

M. Kandemir and Hamprecht, F. A., “Computer-aided diagnosis from weak supervision: A benchmarking study”, Computerized Medical Imaging and Graphics, vol. 42, pp. 44-50, 2014.

Technical Report (4.28 MB)

T. Beier, Kröger, T., Kappes, J. H., Köthe, U., and Hamprecht, F. A., “Cut, Glue and Cut: A Fast, Approximate Solver for Multicut Partitioning”, in 2014 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2014, Columbus, OH, USA, June 23-28, 2014, 2014.

Technical Report (10.06 MB)

2013

J. H. Kappes, Andres, B., Hamprecht, F. A., Schnörr, C., Nowozin, S., Batra, D., Sungwoong, K., Kausler, B. X., Lellmann, J., Komodakis, N., and Rother, C., “A Comparative Study of Modern Inference Techniques for Discrete Energy Minimization Problems”, in CVPR 2013. Proceedings, 2013.

Technical Report (1.35 MB)

J. H. Kappes, Andres, B., Hamprecht, F. A., Schnörr, C., Nowozin, S., Batra, D., Kim, S., Kausler, B. X., Lellmann, J., Komodakis, N., and Rother, C., “A Comparative Study of Modern Inference Techniques for Discrete Energy Minimization Problem”, in CVPR, 2013.

Technical Report (1.35 MB)

M. Schiegg, Hanslovsky, P., Kausler, B. X., Hufnagel, L., and Hamprecht, F. A., “Conservation Tracking”, in ICCV 2013. Proceedings, 2013, p. 2928--2935.

Technical Report (5.22 MB)

B. Maco, Holtmaat, A., Cantoni, M., Kreshuk, A., Straehle, C. N., Hamprecht, F. A., and Knott, G. W., “Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons”, PloS one, vol. 8 (2), 2013.

Technical Report (2.13 MB)

2011

C. N. Straehle, Köthe, U., Knott, G. W., and Hamprecht, F. A., “Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images”, in MICCAI 2011, Proceedings., 2011, vol. 6891, pp. 653-660.

Technical Report (1.69 MB)

F. O. Kaster, Weber, M. - A., and Hamprecht, F. A., “Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations”, in LNCS, 2011, vol. LNCS 6533, pp. 74-85.

Technical Report (544.56 KB)

2010

M. Kirchner, Renard, B. Y., Köthe, U., Pappin, D. J., Hamprecht, F. A., Steen, J. A. J., and Steen, H., “Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments”, Bioinformatics, vol. 26 (1), pp. 77-83, 2010.

Technical Report (380.19 KB)

2009

F. O. Kaster, Kelm, B. Michael, Zechmann, C. M., Weber, M. - A., Hamprecht, F. A., and Nix, O., “Classification of Spectroscopic Images in the DIROlab Environment”, in World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, 2009, vol. 25/V, p. 252--255.

Technical Report (145.73 KB)

B. H. Menze, Kelm, B. Michael, Masuch, R., Himmelreich, U., Bachert, P., Petrich, W., and Hamprecht, F. A., “A Comparison of Random Forest and its Gini Importance with Standard Chemometric Methods for the Feature Selection and Classification of Spectral Data”, BMC Bioinformatics, vol. 10:213, 2009.

Technical Report (675 KB)

2008

M. Hanselmann, Kirchner, M., Renard, B. Y., Amstalden, E. R., Glunde, K., Heeren, R. M. A., and Hamprecht, F. A., “Concise Representation of MS Images by Probabilistic Latent Semantic Analysis”, Analytical Chemistry, vol. 80, pp. 9649-9658, 2008.

Technical Report (3.91 MB)

2007

C. Weber, Zechmann, C. M., Kelm, B. Michael, Zamecnik, R., Hendricks, D., Waldherr, R., Hamprecht, F. A., Delorme, S., Bachert, P., and Ikinger, U., “Comparison of correctness of manuel and automatic evaluation of MR-spectrum with prostrate cancer”, Der Urologe, vol. 46, p. 1252, 2007.

2006

C. M. Zechmann, Kelm, B. Michael, Zamecnik, P., Ikinger, U., Waldherr, R., Röll, S., Delorme, S., Hamprecht, F. A., and Bachert, P., “Can man still beat the machine? Automated vs. manual pattern recognition of 3D MRSI data of prostate cancer patients”, in Proceedings of the 16th ISMRM, 2006.

Technical Report (664.38 KB)

B. Michael Kelm, Menze, B. H., Neff, T., Zechmann, C. M., and Hamprecht, F. A., “CLARET: a tool for fully automated evaluation of MRSI with pattern recognition methods.”, in Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen, 2006, pp. 51-55.

Technical Report (275.25 KB)

M. F. Carlsohn, Menze, B. H., Kelm, B. Michael, Hamprecht, F. A., Kercek, A., Leitner, R., and Polder, G., “Color image processing”, vol. 7(17), R. Lukac and Plataniotis, K. N., Eds. CRC Press, 2006, pp. 393-419.

2004

F. A. Hamprecht, “Classification”, Practical Handbook on Image Processing for Scientific and Technical Applications. CRC Press, pp. 509-519, 2004.

Technical Report (320.84 KB)

B. H. Menze, Wormit, M., Bachert, P., Lichy, M. P., Schlemmer, H. - P., and Hamprecht, F. A., “Classification of in vivo magnetic resonance spectra”, in Classification in ubiquitous challenge: Proceedings of the GfKl 2004, 2004, pp. 362-369.

Technical Report (240.1 KB)

2002

F. A. Hamprecht, Thiel, W., and van Gunsteren, W. F., “Chemical library subset selection algorithms: a unified derivation using spatial statistics”, Journal of Chemical Information and Computer Sciences, vol. 42, pp. 414-428, 2002.