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2012
X. Lou and Hamprecht, F. A., “Structured Learning from Partial Annotations”, ICML 2012. Proceedings, 2012.PDF icon Technical Report (843.45 KB)
E. - A. Horvát, Hanselmann, M., Hamprecht, F. A., and Zweig, K. A., “You Are Who Knows You: Predicting Links Between Non-Members of Facebook”, European Conference on Complex Systems. Proceedings, vol. 3, pp. 309-315, 2012.PDF icon Technical Report (1.92 MB)
2011
A. Kreshuk, Straehle, C. N., Sommer, C., Köthe, U., Cantoni, M., Knott, G. W., and Hamprecht, F. A., “Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images”, PLoS ONE, vol. 6 (10), 2011.PDF icon Technical Report (290.48 KB)
A. Kreshuk, Straehle, C. N., Sommer, C., Köthe, U., Knott, G. W., and Hamprecht, F. A., “Automated Segmentation of Synapses in 3D EM Data”, in Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011). Proceedings, 2011, pp. 220-223.
C. N. Straehle, Köthe, U., Knott, G. W., and Hamprecht, F. A., “Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images”, in MICCAI 2011, Proceedings., 2011, vol. 6891, pp. 653-660.PDF icon Technical Report (1.69 MB)
F. O. Kaster, Weber, M. - A., and Hamprecht, F. A., “Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations”, in LNCS, 2011, vol. LNCS 6533, pp. 74-85.PDF icon Technical Report (544.56 KB)
X. Lou, Kaster, F. O., Lindner, M., Kausler, B. X., Köthe, U., Höckendorf, B., Wittbrodt, J., Jänicke, H., and Hamprecht, F. A., “DELTR: Digital Embryo Lineage Tree Reconstructor”, in Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings, 2011, pp. 1557-1560.PDF icon Technical Report (1.44 MB)
S. Wanner, Sommer, C., Rocholz, R., Hamprecht, F. A., and Jähne, B., “A Framework for Interactive Visualization and Classification of Dynamical Processes at the Water Surface”, in 16th International Workshop on Vision, Modelling and Visualization, 2011, pp. 199-206.PDF icon Technical Report (4.67 MB)
S. Wanner, Sommer, C., Rocholz, R., Jung, M., Hamprecht, F. A., and Jähne, B., “A framework for interactive visualization and classification of dynamical processes at the water surface”, in 16th International Workshop on Vision, Modelling and Visualization, 2011, p. 199--206.
J. Röder, Tolosana-Delgado, R., and Hamprecht, F. A., “Gaussian process classification: singly versus doubly stochastic models, and new computational schemes”, Stochastic Environmental Research & Risk Assessment, vol. 25 (7), pp. 865-879, 2011.PDF icon Technical Report (672.68 KB)
C. Sommer, Straehle, C. N., Köthe, U., and Hamprecht, F. A., “ilastik: Interactive Learning and Segmentation Toolkit”, in Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings, 2011, pp. 230-233.
M. Frank and Hamprecht, F. A., “Image-Based Supervision of a Periodically Working Machine”, Pattern Analysis and Applications, pp. 1-10, 2011.PDF icon Technical Report (466.61 KB)
F. O. Kaster, Merkel, B., Nix, O., and Hamprecht, F. A., “An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements”, Computer Science - Research and Development, vol. 26, pp. 65-85, 2011.PDF icon Technical Report (808.16 KB)
B. H. Menze, Kelm, B. Michael, Splitthoff, N., Köthe, U., and Hamprecht, F. A., “On oblique random forests”, in European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings., 2011, pp. 453-469.PDF icon Technical Report (665.33 KB)
B. Andres, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “Probabilistic Image Segmentation with Closedness Constraints”, in ICCV, Proceedings, 2011, pp. 2611 - 2618.PDF icon Technical Report (8.18 MB)
B. Andres, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “Probabilistic Image Segmentation with Closedness Constraints”, in Proceedings of ICCV, 2011.PDF icon Technical Report (2.95 MB)
B. Andres, Kappes, J. H., Beier, T., Köthe, U., and Hamprecht, F. A., “Probabilistic Image Segmentation with Closedness Constraints”, in Proceedings of ICCV, 2011.
M. Hanselmann, Voss, B., Renard, B. Y., Lindner, M., Köthe, U., Kirchner, M., and Hamprecht, F. A., “SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists”, Bioinformatics, vol. 27 (7), pp. 987-993, 2011.PDF icon Technical Report (2.2 MB)
X. Lou and Hamprecht, F. A., “Structured Learning for Cell Tracking”, in NIPS 2011. Proceedings, 2011, pp. 1296-1304.PDF icon Technical Report (1.41 MB)
B. Michael Kelm, Kaster, F. O., Henning, A., Weber, M. - A., Bachert, P., Bösinger, P., Hamprecht, F. A., and Menze, B. H., “Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images”, NMR in Biomedicine, vol. 25(1), pp. 1-13, 2011.PDF icon Technical Report (1.94 MB)
M. Pfannmöller, Flügge, H., Benner, G., Wacker, I., Sommer, C., Hanselmann, M., Schmale, S., Schmidt, H., Hamprecht, F. A., Rabe, T., Kowalsky, W., and Schröder, R., “Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy”, Nano Letters, vol. 11, pp. 3099-3107, 2011.
2010
A. Kreshuk, Stankiewicz, M., Lou, X., Kirchner, M., Hamprecht, F. A., and Mayer, M. P., “Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon”, International Journal of Mass Spectrometry, vol. 302, pp. 125-131, 2010.PDF icon Technical Report (3.22 MB)
M. Kirchner, Renard, B. Y., Köthe, U., Pappin, D. J., Hamprecht, F. A., Steen, J. A. J., and Steen, H., “Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments”, Bioinformatics, vol. 26 (1), pp. 77-83, 2010.PDF icon Technical Report (380.19 KB)
X. Lou, Kirchner, M., Renard, B. Y., Köthe, U., Graf, C., Lee, C., Steen, J. A. J., Steen, H., Mayer, M. P., and Hamprecht, F. A., “Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments”, Bioinformatics, vol. 26(12), pp. 1535-1541, 2010.PDF icon Technical Report (518.01 KB)
B. Andres, Kappes, J. H., Köthe, U., Schnörr, C., and Hamprecht, F. A., “An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM”, in Pattern Recognition, Proc.~32th DAGM Symposium, 2010, pp. 353-362.
B. Andres, Kappes, J. H., Köthe, U., Schnörr, C., and Hamprecht, F. A., “An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM”, in Pattern Recognition, Proc.~32th DAGM Symposium, 2010.PDF icon Technical Report (218.43 KB)
B. Y. Renard, Timm, W., Kirchner, M., Steen, J. A. J., Hamprecht, F. A., and Steen, H., “Estimating the Confidence of Peptide Identifications without Decoy Databases”, Analytical Chemistry, pp. 4314-4318, 2010.PDF icon Technical Report (619.11 KB)
U. Köthe, Andres, B., Kröger, T., and Hamprecht, F. A., “Geometric Analysis of 3D Electron Microscopy Data”, in Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM), 2010, pp. 22-26.PDF icon Technical Report (1.43 MB)
B. Andres, Köthe, U., Kröger, T., and Hamprecht, F. A., “How to Extract the Geometry and Topology from Very Large 3D Segmentations”, ArXiv e-prints, 2010.PDF icon Technical Report (1.44 MB)
B. Andres, Kappes, J. H., Köthe, U., and Hamprecht, F. A., “The Lazy Flipper: MAP Inference in Higher-Order Graphical Models by Depth-limited Exhaustive Search”, ArXiv e-prints, 2010.PDF icon Technical Report (625.06 KB)
M. Kirchner, Steen, J. A. J., Hamprecht, F. A., and Steen, H., “MGFp: An Open Mascot Generic Format Parser Library Implementation”, Journal of Proteome Research, vol. 9 (5), p. 27622763, 2010.PDF icon Technical Report (125.18 KB)
B. H. Menze and Hamprecht, F. A., “Multimodal Medical Image Analysis: from Visualization to Disease Modeling”, Zeitschrift für Med. Physik, vol. 1, pp. 1-2, 2010.PDF icon Technical Report (481.58 KB)
F. O. Kaster, Kassemeyer, S., Merkel, B., Nix, O., and Hamprecht, F. A., “An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements”, in Bildverarbeitung für die Medizin 2010 -- Algorithmen, Systeme, Anwendungen, 2010, pp. 97-101.PDF icon Technical Report (1.12 MB)
B. Andres, Köthe, U., Kröger, T., and Hamprecht, F. A., “Runtime-Flexible Multi-dimensional Views and Arrays for C++98 and C++0x”, ArXiv e-prints, 2010.PDF icon Technical Report (415.54 KB)
2009
L. Görlitz, Hamprecht, F. A., and Staudacher, M., “Allocation of particles to development processes”, Patent, 2009.PDF icon Technical Report (406.7 KB)

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