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2021
P. Esser, Rombach, R., Blattmann, A., and Ommer, B., “ImageBART: Bidirectional Context with Multinomial Diffusion for Autoregressive Image Synthesis”. 2021.
A. Sanakoyeu, Ma, P., Tschernezki, V., and Ommer, B., “Improving Deep Metric Learning by Divide and Conquer”, IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), 2021.
L. M. Schütz, Louveaux, M., Vilches-Barro, A., Bouziri, S., Cerrone, L., Wolny, A., Kreshuk, A., Hamprecht, F. A., and Maizel, A., “Integration of Cell Growth and Asymmetric Division during Lateral Root Initiation in Arabidopsis thaliana”, Plant and Cell Physiology, vol. 62, no. 8, pp. 1269-1279, 2021.
A. Blattmann, Milbich, T., Dorkenwald, M., and Ommer, B., “iPOKE: Poking a Still Image for Controlled Stochastic Video Synthesis”, in Proceedings of the International Conference on Computer Vision (ICCV), 2021.
A. Andersson, Diego, F., Hamprecht, F. A., and Wählby, C., “ISTDECO: In Situ Transcriptomics Decoding by Deconvolution”, bioRxiv, 2021.
2020
S. Wolf, Hamprecht, F. A., and Funke, J., “Inpainting Networks Learn to Separate Cells in Microscopy Images”, BMCV. 2020.PDF icon Technical Report (357.23 KB)
S. Wolf, Hamprecht, F. A., and Funke, J., “Instance Separation Emerges from Inpainting”, arXiv preprint arXiv:2003.00891, 2020.
2019
S. Berg, Kutra, D., Kroeger, T., Straehle, C. N., Kausler, B. X., Haubold, C., Schiegg, M., Ales, J., Beier, T., Rudy, M., Eren, K., Cervantes, J. I., Xu, B., Beuttenmüller, F., Wolny, A., Zhang, C., Köthe, U., Hamprecht, F. A., and Kreshuk, A., “ilastik: interactive machine learning for (bio)image analysis”, Nature Methods, vol. 16, pp. 1226-1232, 2019.
R. Remme, “Instance Segmentation via Associative Pixel Embeddings”, Heidelberg University, 2019.
S. I. Friman and Jähne, B., “Investigating SO2 transfer across the air–water interface via LIF”, Exp. Fluids, vol. 60, p. 65, 2019.
O. Hosseini Jafari, Mustikovela, S. Karthik, Pertsch, K., Brachmann, E., and Rother, C., “iPose: Instance-Aware 6D Pose Estimation of Partly Occluded Objects”, in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2019, vol. 11363 LNCS, pp. 477–492.
P. Hanslovsky, “Isotropic Reconstruction of Neural Morphology from Large Non-Isotropic 3D Electron MIcroscopy”. Heidelberg University, 2019.
2018
R. Hühnerbein, Savarino, F., Aström, F., and Schnörr, C., “Image Labeling Based on Graphical Models Using Wasserstein Messages and Geometric Assignment”, SIAM Journal on Imaging Sciences, vol. 11, no. 2, pp. 1317-1362, 2018.PDF icon Technical Report (2.62 MB)
R. Hühnerbein, Savarino, F., Aström, F., and Schnörr, C., “Image Labeling Based on Graphical Models Using Wasserstein Messages and Geometric Assignment”, SIAM J. Imaging Science, vol. 11, pp. 1317–1362, 2018.
U. Büchler, Brattoli, B., and Ommer, B., “Improving Spatiotemporal Self-Supervision by Deep Reinforcement Learning”, in Proceedings of the European Conference on Computer Vision (ECCV), Munich, Germany, 2018.PDF icon Article (5.34 MB)PDF icon buechler_eccv18_poster.pdf (1.65 MB)
J. Kunz and Jähne, B., “Investigating small scale air-sea exchange processes via thermography”, Front. Mech. Eng., vol. 26, 2018.
O. Hosseini Jafari, Mustikovela, S. K., Pertsch, K., Brachmann, E., and Rother, C., “iPose: Instance-Aware 6D Pose Estimation of Partly Occluded Objects”, ACCV. Proceedings, in press. 2018.PDF icon Technical Report (3.28 MB)
2017
R. Hühnerbein, Savarino, F., Aström, F., and Schnörr, C., “Image Labeling Based on Graphical Models Using Wasserstein Messages and Geometric Assignment”. 2017.
F. Aström, Petra, S., Schmitzer, B., and Schnörr, C., “Image Labeling by Assignment”, J. Math. Imag. Vision, vol. 58, pp. 211–238, 2017.
M. Zisler, Aström, F., Petra, S., and Schnörr, C., “Image Reconstruction by Multilabel Propagation”, in Proc. SSVM, 2017, vol. 10302.
J. Hennies, “Improvement and Validation of Neural EM Volume Image Segmentation by High-Level Information”, University of Heidelberg, 2017.
A. Kirillov, Levinkov, E., Andres, B., Savchynskyy, B., and Rother, C., “InstanceCut: From edges to instances with MultiCut”, in Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017, 2017, vol. 2017-Janua, pp. 7322–7331.
A. Haller, “Interactive Watershed Based Segmentation for Biological Images”, University of Heidelberg, 2017.
2016
F. Aström, Petra, S., Schmitzer, B., and Schnörr, C., “Image Labeling by Assignment”. 2016.
E. Meijering, Carpenter, A. E., Peng, H., Hamprecht, F. A., and Olivo-Marin, J., “Imagining the future of bioimage analysis”, Nature Biotechnology, vol. 34, no. 12, pp. 1250-1255, 2016.PDF icon Technical Report (924.57 KB)
Y. Censor, Gibali, A., Lenzen, F., and Schnörr, C., “The Implicit Convex Feasibility Problem and Its Application to Adaptive Image Denoising”, J. Comp. Math., vol. 34, pp. 608-623, 2016.
A. Biller, Badde, S., Nagel, A., Neumann, J. O., Wick, W., Hertenstein, A., Bendszus, M., Sahm, F., Benkhedah, N., and Kleesiek, J., “Improved Brain Tumor Classification by Sodium MR Imaging: Prediction of IDH Mutation Status and Tumor Progression”, American Journal of Neuroradiology, vol. 37 , pp. 66-73, 2016.
J. Mund, Michel, F., Dieke-Meier, F., Fricke, H., Meyer, L., and Rother, C., “Introducing LiDAR Point Cloud-based Object Classification for Safer Apron Operations”, in International Symposium on Enhanced Solutions for Aircraft and Vehicle Surveillance Applications, 2016.
2015
N. Krasowski, Beier, T., Knott, G. W., Köthe, U., Hamprecht, F. A., and Kreshuk, A., “Improving 3D EM Data Segmentation by Joint Optimization over Boundary Evidence and Biological Priors”, in 12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015, 2015, pp. 536-539.PDF icon Technical Report (2.25 MB)
A. Kirillov, Savchynskyy, B., Schlesinger, D., Vetrov, D., and Rother, C., “Inferring M-best diverse labelings in a single one”, in Proceedings of the IEEE International Conference on Computer Vision, 2015, vol. 2015 Inter, pp. 1814–1822.
D. Kiefhaber, Zappa, C. J., and Jähne, B., “Influence of natural surfactants on short wind waves in the coastal Peruvian waters”, vol. 12, pp. 1291–1325, 2015.
K. Schelten, Nowozin, S., Jancsary, J., Rother, C., and Roth, S., “Interleaved regression tree field cascades for blind image deconvolution”, in Proceedings - 2015 IEEE Winter Conference on Applications of Computer Vision, WACV 2015, 2015, pp. 494–501.
2014
J. Kleesiek, Biller, A., Urban, G., Köthe, U., Bendszus, M., and Hamprecht, F. A., “ilastik for Multi-modal Brain Tumor Segmentation”, in MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, 3rdplace, 2014, pp. 12-17.PDF icon Technical Report (405.91 KB)
F. Blumenthal, “Information-Geometric Optimization for Image Segmentation”, University of Heidelberg, 2014.
M. Kandemir and Hamprecht, F. A., “Instance Label Prediction by Dirichlet Process Multiple Instance Learning”, in UAI. Proceedings, 2014.PDF icon Technical Report (4.26 MB)

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