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2009
S. V. E. Keränen, DePace, A., Hendriks, C. L. Luengo, Fowlkes, C., Arbelaez, P., Ommer, B., Brox, T., Henriquez, C., Wunderlich, Z., Eckenrode, K., Fischer, B., Hammonds, A., and Celniker, S. E., “Computational Analysis of Quantitative Changes in Gene Expression and Embryo Morphology between Species”, in Evolution-The Molecular Landscape, 2009.
M. Hering, Körner, K., and Jähne, B., “Correlated speckle noise in white-light interferometry: theoretical analysis of measurement uncertainty”, Appl. Optics, vol. 48, p. 525--538, 2009.
M. Frank, Plaue, M., and Hamprecht, F. A., “Denoising of Continuous-Wave Time-Of-Flight Depth Images Using Confidence Measures”, Optical Engineering, vol. 48, 077003, 2009.PDF icon Technical Report (2.5 MB)
B. Michael Kelm, Menze, B. H., Nix, O., Zechmann, C. M., and Hamprecht, F. A., “Estimating Kinetic Parameter Maps from Dynamic Contrast-Enhanced MRI using Spatial Prior Knowledge”, IEEE Transaction on Medical Imaging, vol. 28:10, pp. 1534-1547, 2009.PDF icon Technical Report (419.8 KB)
C. Thieke, Nix, O., Koehn, A., Floca, R., van Straaten, D., Hahn, H., Strauss, L. G., Siems, U., Graf, M., Pruem, H., Klein, J., Laue, H., and Kaster, F. O., “A framework and multi-application prototype for integrated radiological diagnostics and radiation therapy”, Strahlentherapie und Onkologie, vol. 185, p. 81, 2009.
M. Hanselmann, Köthe, U., Renard, B. Y., Kirchner, M., Heeren, R. M. A., and Hamprecht, F. A., “Multivariate Watershed Segmentation of Compositional Data”, in Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press, 2009, vol. 5810, pp. 180-192.PDF icon Technical Report (1.25 MB)
M. Hanselmann, Köthe, U., Renard, B. Y., Kirchner, M., Heeren, R. M. A., and Hamprecht, F. A., “Multivariate Watershed Segmentation of Compositional Data”, in Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press, 2009, vol. 5810, pp. 180-192.PDF icon Technical Report (1.25 MB)
M. Hanselmann, Köthe, U., Renard, B. Y., Kirchner, M., Heeren, R. M. A., and Hamprecht, F. A., “Multivariate Watershed Segmentation of Compositional Data”, in Proceedings of the 15th International Conference on Discrete Geometry for Computer Imagery (DGCI), in press, 2009, vol. 5810, pp. 180-192.PDF icon Technical Report (1.25 MB)
S. Trittler and Hamprecht, F. A., “Near-Optimum Sampling Design and an Efficient Algorithm for Single Tone Frequency Estimation”, Digital Signal Processing, vol. 19, pp. 628-639, 2009.PDF icon Technical Report (511.23 KB)
L. Görlitz, Menze, B. H., Kelm, B. Michael, and Hamprecht, F. A., “Processing Spectral Data”, Surface and Interface Analysis, vol. 41, pp. 636-644, 2009.PDF icon Technical Report (4.17 MB)
B. Andres, Köthe, U., Bonea, A., Nadler, B., and Hamprecht, F. A., “Quantitative Assessment of Image Segmentation Quality by Random Walk Relaxation Times”, in Pattern Recognition. 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings, 2009, vol. 5748, pp. 502-511.PDF icon Technical Report (3.08 MB)
M. Staudacher, Hamprecht, F. A., and Görlitz, L., “Self Adjustment of Scanning Electron Microscopes / Selbstadaptivität von Rasterelektronenmikroskopen”, Patent, Patent Number WO2009062781A1, 2009.PDF icon Technical Report (46.64 KB)
M. Frank, Plaue, M., Rapp, H., Köthe, U., Jähne, B., and Hamprecht, F. A., “Theoretical and Experimental Error Analysis of Continuous-Wave Time-Of-Flight Range Cameras”, Optical Engineering, vol. 48, 013602, 2009.PDF icon Technical Report (2.03 MB)
M. Frank, Plaue, M., Rapp, H., Köthe, U., Jähne, B., and Hamprecht, F. A., “Theoretical and experimental error analysis of continuous-wave time-of-flight range cameras”, Opt. Eng., vol. 48, p. 013602, 2009.
C. S. Garbe, Nagel, L., Hung, L. - P., and Tsai, W. - T., “Thermographic measurements of the temperature difference across the air- water interface: results from experimental and numerical studies”, in Poster abstracts SOLAS Open Science Conference, Barcelona, 16--19 Sep. 2009, 2009.
M. Hanselmann, Köthe, U., Kirchner, M., Renard, B. Y., Amstalden, E. R., Glunde, K., Heeren, R. M. A., and Hamprecht, F. A., “Towards Digital Staining using Imaging Mass Spectrometry and Random Forests”, Journal of Proteome Research, vol. 8, pp. 3558-3567, 2009.PDF icon Technical Report (1.47 MB)
M. Hanselmann, Köthe, U., Kirchner, M., Renard, B. Y., Amstalden, E. R., Glunde, K., Heeren, R. M. A., and Hamprecht, F. A., “Towards Digital Staining using Imaging Mass Spectrometry and Random Forests”, Journal of Proteome Research, vol. 8, pp. 3558-3567, 2009.PDF icon Technical Report (1.47 MB)
M. Hanselmann, Köthe, U., Kirchner, M., Renard, B. Y., Amstalden, E. R., Glunde, K., Heeren, R. M. A., and Hamprecht, F. A., “Towards Digital Staining using Imaging Mass Spectrometry and Random Forests”, Journal of Proteome Research, vol. 8, pp. 3558-3567, 2009.PDF icon Technical Report (1.47 MB)
B. Y. Renard, Kirchner, M., Monigatti, F., Ivanov, A. R., Rappsilber, J., Winter, D., Steen, J. A. J., Hamprecht, F. A., and Steen, H., “When Less Can Yield More - Computational Preprocessing of MS/MS Spectra for Peptide Identification Preprocessing”, Proteomics, vol. 9, pp. 4978-4984, 2009.PDF icon Technical Report (901.78 KB)
2010
F. Haug and Jähne, B., “6 DoF appearance-based object localization with local covariant features”, in Forum Bildverarbeitung, 2010, p. 13--24.
F. Haug and Jähne, B., “6 DoF appearance-based object localization with local covariant features”, in Forum Bildverarbeitung, 2010, p. 13--24.
N. Hüsken, “Active and Online Learning for Interactive Image Analysis”, University of Heidelberg, 2010.
F. Haug, “Ansichtsbasierte 6 DoF Objekterkennung mit lokalen kovarianten Regionen”, vol. Dissertation. IWR, Fakultät für Mathematik und Informatik, Univ. Heidelberg, 2010.
A. Kreshuk, Stankiewicz, M., Lou, X., Kirchner, M., Hamprecht, F. A., and Mayer, M. P., “Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon”, International Journal of Mass Spectrometry, vol. 302, pp. 125-131, 2010.PDF icon Technical Report (3.22 MB)
T. Hörnlein, “Boosted Feature Generation for Classification Problems Involving High Numbers of Inputs and Classes”, vol. Dissertation. IWR, Fakultät für Mathematik und Informatik, Univ. Heidelberg, 2010.
M. Hanselmann, “Computational Methods for the Analysis of Mass Spectrometry Images”. University of Heidelberg, 2010.
M. Kirchner, Renard, B. Y., Köthe, U., Pappin, D. J., Hamprecht, F. A., Steen, J. A. J., and Steen, H., “Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments”, Bioinformatics, vol. 26 (1), pp. 77-83, 2010.PDF icon Technical Report (380.19 KB)
X. Lou, Kirchner, M., Renard, B. Y., Köthe, U., Graf, C., Lee, C., Steen, J. A. J., Steen, H., Mayer, M. P., and Hamprecht, F. A., “Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments”, Bioinformatics, vol. 26(12), pp. 1535-1541, 2010.PDF icon Technical Report (518.01 KB)
B. Andres, Kappes, J. H., Köthe, U., Schnörr, C., and Hamprecht, F. A., “An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM”, in Pattern Recognition, Proc.~32th DAGM Symposium, 2010, pp. 353-362.
B. Andres, Kappes, J. H., Köthe, U., Schnörr, C., and Hamprecht, F. A., “An Empirical Comparison of Inference Algorithms for Graphical Models with Higher Order Factors Using OpenGM”, in Pattern Recognition, Proc.~32th DAGM Symposium, 2010.PDF icon Technical Report (218.43 KB)
B. Y. Renard, Timm, W., Kirchner, M., Steen, J. A. J., Hamprecht, F. A., and Steen, H., “Estimating the Confidence of Peptide Identifications without Decoy Databases”, Analytical Chemistry, pp. 4314-4318, 2010.PDF icon Technical Report (619.11 KB)
A. G. Herzog, Binder, T., Friedl, F., and Jähne, B., “Estimating water-sided vertical gas concentration profiles by inverse modeling”, in 2nd Int. Conf. Eng. Optimization, Lisbon, 6--9. Sep. 2010, 2010.
K. Börner, Hermle, J., Sommer, C., Brown, N. P., Knapp, B., Glass, B., Torralba, G., Reymann, J., Beil, N., Beneke, J., Pepperkok, R., Schneider, R., and Ludwig, T., “From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication”, Biotechnology Journal, vol. 5, pp. 39-49, 2010.PDF icon Technical Report (556.09 KB)
U. Köthe, Andres, B., Kröger, T., and Hamprecht, F. A., “Geometric Analysis of 3D Electron Microscopy Data”, in Proceedings of Workshop on Discrete Geometry and Mathematical Morphology (WADGMM), 2010, pp. 22-26.PDF icon Technical Report (1.43 MB)
B. Andres, Köthe, U., Kröger, T., and Hamprecht, F. A., “How to Extract the Geometry and Topology from Very Large 3D Segmentations”, ArXiv e-prints, 2010.PDF icon Technical Report (1.44 MB)

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