Publications

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2017
S. Ramos, Gehrig, S., Pinggera, P., Franke, U., and Rother, C., Detecting unexpected obstacles for self-driving cars: Fusing deep learning and geometric modeling, in IEEE Intelligent Vehicles Symposium, Proceedings, 2017, pp. 1025–1032.
M. Zisler, Savarino, F., Petra, S., and Schnörr, C., Gradient Flows on a Riemannian Submanifold for Discrete Tomography, in Proc. GCPR, 2017.
F. Aström, Petra, S., Schmitzer, B., and Schnörr, C., Image Labeling by Assignment, J. Math. Imag. Vision, vol. 58, pp. 211–238, 2017.
M. Zisler, Aström, F., Petra, S., and Schnörr, C., Image Reconstruction by Multilabel Propagation, in Proc. SSVM, 2017, vol. 10302.
E. Bodnariuc, Petra, S., Schnörr, C., and Voorneveld, J., A Local Spatio-Temporal Approach to Plane Wave Ultrasound Particle Image Velocimetry, in Proc. GCPR, 2017.
T. Beier, Pape, C., Rahaman, N., Prange, T., Berg, S., Bock, D., Cardona, A., Knott, G. W., Plaza, S. M., Scheffer, L. K., Köthe, U., Kreshuk, A., and Hamprecht, F. A., Multicut brings automated neurite segmentation closer to human performance, Nature Methods, vol. 14, no. 2, pp. 101-102, 2017.
T. Beier, Pape, C., Rahaman, N., Prange, T., Berg, S., Bock, D., Cardona, A., Knott, G. W., Plaza, S. M., Scheffer, L. K., Köthe, U., Kreshuk, A., and Hamprecht, F. A., Multicut brings automated neurite segmentation closer to human performance, Nature Methods, vol. 14, no. 2, pp. 101-102, 2017.
T. Beier, Pape, C., Rahaman, N., Prange, T., Berg, S., Bock, D., Cardona, A., Knott, G. W., Plaza, S. M., Scheffer, L. K., Köthe, U., Kreshuk, A., and Hamprecht, F. A., Multicut brings automated neurite segmentation closer to human performance, Nature Methods, vol. 14, no. 2, pp. 101-102, 2017.
C. Pape, Beier, T., Li, P., Jain, V., Brock, D. D., and Kreshuk, A., Solving Large Multicut Problems for Connectomics via Domain Decomposition, Bioimage Computing Workshop. ICCV. pp. 1-10, 2017.
S. Peter, Kirschbaum, E., Both, M., Campbell, L. A., Harvey, B. K., Heins, C., Durstewitz, D., Diego, F., and Hamprecht, F. A., Sparse convolutional coding for neuronal assembly detection, NIPS, poster. 2017.
2016
C. Proß, Analysis of the Fetch Dependency of the Slope of Wind-Water Waves, Institut für Umweltphysik, Universität Heidelberg, Germany, 2016.
F. Aström, Petra, S., Schmitzer, B., and Schnörr, C., The Assignment Manifold: A Smooth Model for Image Labeling, in Proc. 2nd Int. Workshop on Differential Geometry in Computer Vision and Machine Learning (DIFF-CVML'16; oral presentation; Grenander best paper award), 2016.
C. Pape, Automatic Segmentation of Neurites from Anisotropic EM-Imaging, University of Heidelberg, 2016.
T. Prange, Automatic Segmentation of Neurons in Electron Microscopy Data with Membrane Defects, University of Heidelberg, 2016.
M. Zisler, Petra, S., Schnörr, C., and Schnörr, C., Discrete Tomography by Continuous Multilabeling Subject to Projection Constraints, in Proc. GCPR, 2016.
F. Aström, Petra, S., Schmitzer, B., and Schnörr, C., A Geometric Approach to Image Labeling, in Proc. ECCV, 2016.
F. Aström, Petra, S., Schmitzer, B., and Schnörr, C., Image Labeling by Assignment. 2016.
E. Meijering, Carpenter, A. E., Peng, H., Hamprecht, F. A., and Olivo-Marin, J., Imagining the future of bioimage analysis, Nature Biotechnology, vol. 34, no. 12, pp. 1250-1255, 2016.PDF icon Technical Report (924.57 KB)
P. Pinggera, Ramos, S., Gehrig, S., Franke, U., Rother, C., and Mester, R., Lost and found: Detecting small road hazards for self-driving vehicles, in IEEE International Conference on Intelligent Robots and Systems, 2016, vol. 2016-Novem, pp. 1099–1106.
M. Zisler, Kappes, J. H., Schnörr, C., Petra, S., and Schnörr, C., Non-Binary Discrete Tomography by Continuous Non-Convex Optimization, IEEE Comp. Imaging, vol. 2, pp. 335-347, 2016.
E. Bodnariuc, Petra, S., Poelma, C., and Schnörr, C., Parametric Dictionary-Based Velocimetry for Echo PIV, in Proc. CGPR, 2016.
E. Bodnariuc, Petra, S., Poelma, C., and Schnörr, C., Parametric Dictionary-Based Velocimetry for Echo PIV, in Proc. CGPR, 2016.
E. Bodnariuc, Schiffner, M. F., Petra, S., and Schnörr, C., Plane Wave Acoustic Superposition for Fast Ultrasound Imaging, International Ultrasonics Symposium. 2016.
J. Kleesiek, Petersen, J., Döring, M., Maier-Hein, K., Köthe, U., Wick, W., Hamprecht, F. A., Bendszus, M., and Biller, A., Virtual Raters for Reproducible and Objective Assessments in Radiology, Nature Scientific Reports, vol. 6, 2016.PDF icon Technical Report (2.81 MB)
2015
E. Bodnariuc, Gurung, A., Petra, S., and Schnörr, C., Adaptive Dictionary-Based Spatio-temporal Flow Estimation for Echo PIV, in EMMCVPR, 2015.
E. Bodnariuc, Gurung, A., Petra, S., and Schnörr, C., Adaptive Dictionary-Based Spatio-temporal Flow Estimation for Echo PIV, in Proc.~EMMCVPR, 2015, vol. 8932, p. 378--391.PDF icon Technical Report (951.37 KB)
N. Krah, Testa, M., Brons, S., Jäkel, O., Parodi, K., Voss, B., and Rinaldi, I., An advanced image processing method to improve the spatial resolution of ion radiographies, Physics in Medicine and Biology, vol. 60, p. 8525, 2015.
A. Kreshuk, Walecki, R., Köthe, U., Gierthmühlen, M., Plachta, D., Genoud, C., Haastert-Talini, K., and Hamprecht, F. A., Automated Tracing of Myelinated Axons and Detection of the Nodes of Ranvier in Serial Images of Peripheral Nerves, Journal of Microscopy, vol. 259 (2), pp. 143-154, 2015.
S. Zheng, Prisacariu, V. Adrian, Averkiou, M., Cheng, M. Ming, Mitra, N. J., Shotton, J., Torr, P. H. S., and Rother, C., Object proposals estimation in depth image using compact 3D shape manifolds, in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2015, vol. 9358, pp. 196–208.
N. J. Mitra, Stam, J., Xu, K., Cheng, M. - M., Prisacariu, V. Adrian, Zheng, S., Torr, P. H. S., and Rother, C., Pacific Graphics 2015 DenseCut: Densely Connected CRFs for Realtime GrabCut, vol. 34, 2015.
S. Peter, Spatio-Temporal Motif Deconvolution for Calcium Image Analysis, University of Heidelberg, 2015.
J. H. Kappes, Petra, S., Schnörr, C., and Zisler, M., TomoGC: Binary Tomography by Constrained Graph Cuts, in Proc. GCPR, 2015.
J. H. Kappes, Petra, S., Schnörr, C., and Zisler, M., TomoGC: Binary Tomography by Constrained Graph Cuts, in Proc.~GCPR, 2015.PDF icon Technical Report (2.46 MB)
J. P. Kauppi, Kandemir, M., Saarinen, V. M., Hirvenkari, L., Parkkonen, L., Klami, A., Hari, R., and Kaski, S., Towards brain-activity-controlled information retrieval: Decoding image relevance from MEG signals, NeuroImage, vol. 112, pp. 288-298, 2015.PDF icon Technical Report (2.39 MB)

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