Publications

2012
Lou, X and Hamprecht, F A (2012). Learning to Segment Dense Cell Nuclei with Shape Prior. CVPR 2012. Proceedings. 1012-1018 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.66 MB)
Sommer, C, Fiaschi, L, Hamprecht, F A and Gerlich, D (2012). Learning-based Mitotic Cell Detection in Histopathological Images. ICPR 2012. Proceedings. 2306-2309 Google Scholar BibTeX RTF EndNote XML Technical Report (1.96 MB)
Horvát, E - A, Hanselmann, M, Hamprecht, F A and Zweig, K A (2012). One plus one makes three (for social networks). PLoS ONE. 4,7 DOI Google Scholar BibTeX RTF EndNote XML
Renard, B Y, Xu, B, Kirchner, M, Zickmann, F, Winter, D, Korten, S, Brattig, N, Tzur, A, Hamprecht, F A and Steen, H (2012). Overcoming species boundaries in peptide identification with BICEPS. Molecular and Cellular Proteomics. 11 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (444.6 KB)
Lou, X, Fiaschi, L, Köthe, U and Hamprecht, F A (2012). Quality Classification of Microscopic Imagery with Weakly Supervised Learning. MICCAI-MLMI. Proceedings. 176-183 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (4.15 MB)
Álvarez, J M, Gevers, T, Diego, F and López, A M (2012). Road Geometry Classification by Adaptive Shape Models. IEEE Transactions on Intelligent Transportation Systems (ITS). 99 1-10 DOI Google Scholar BibTeX RTF EndNote XML
Straehle, C N, Köthe, U, Briggman, K, Denk, W and Hamprecht, F A (2012). Seeded watershed cut uncertainty estimators for guided interactive segmentation. CVPR 2012. Proceedings. 765 - 772 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.84 MB)
Lou, X and Hamprecht, F A (2012). Structured Learning from Partial Annotations. ICML 2012. Proceedings. http://icml.cc/discuss/2012/753.html Google Scholar BibTeX RTF EndNote XML Technical Report (843.45 KB)
Andres, B, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2012). The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models. Computer Vision - {ECCV} 2012 - 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part {VII}. http://dx.doi.org/10.1007/978-3-642-33786-4_12 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (446.28 KB)
Horvát, E - A, Hanselmann, M, Hamprecht, F A and Zweig, K A (2012). You Are Who Knows You: Predicting Links Between Non-Members of Facebook. European Conference on Complex Systems. Proceedings. 3 309-315 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.92 MB)

2011
Wanner, S, Sommer, C, Rocholz, R, Hamprecht, F A and Jähne, B (2011). A Framework for Interactive Visualization and Classification of Dynamical Processes at the Water Surface. 16th International Workshop on Vision, Modelling and Visualization. Eurographics Association, Germany. 199-206 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (4.67 MB)
Lindner, M (2011). A Machine Learning Approach To Improve Digital Embryo Analysis. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kaster, F O, Merkel, B, Nix, O and Hamprecht, F A (2011). An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements. Computer Science - Research and Development. 26 65-85 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (808.16 KB)
Kreshuk, A, Straehle, C N, Sommer, C, Köthe, U, Cantoni, M, Knott, G W and Hamprecht, F A (2011). Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images. PLoS ONE. 6 (10) DOI Google Scholar BibTeX RTF EndNote XML Technical Report (290.48 KB)
Andres, B (2011). Automated Segmentation of Large 3D Images of Nervous Systems Using a Higher-order Graphical Model. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Lou, X (2011). Biomedical Data Analysis with Prior Knowledge: Modeling and Learning. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Straehle, C N, Köthe, U, Knott, G W and Hamprecht, F A (2011). Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images. MICCAI 2011, Proceedings. Springer. 6891 653-660 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.69 MB)
Kaster, F O, Weber, M - A and Hamprecht, F A (2011). Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations. LNCS. Springer, Heidelberg. LNCS 6533 74-85 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (544.56 KB)
Lou, X, Kaster, F O, Lindner, M, Kausler, B X, Köthe, U, Höckendorf, B, Wittbrodt, J, Jänicke, H and Hamprecht, F A (2011). DELTR: Digital Embryo Lineage Tree Reconstructor. Eighth IEEE International Symposium on Biomedical Imaging (ISBI). Proceedings. 1557-1560 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.44 MB)
Röder, J, Tolosana-Delgado, R and Hamprecht, F A (2011). Gaussian process classification: singly versus doubly stochastic models, and new computational schemes. Stochastic Environmental Research & Risk Assessment. 25 (7) 865-879 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (672.68 KB)
Kappes, J H, Speth, M, Andres, B, Reinelt, G and Schnörr, C (2011). Globally Optimal Image Partitioning by Multicuts. EMMCVPR. Springer. 31-44 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (7.3 MB)
Sommer, C, Straehle, C N, Köthe, U and Hamprecht, F A (2011). ilastik: Interactive Learning and Segmentation Toolkit. Eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011).Proceedings. 230-233 DOI Google Scholar BibTeX RTF EndNote XML
Kaster, F O (2011). Image Analysis for the Life Sciences - Computer-assisted Tumor Diagnostics and Digital Embryomics. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Schleicher, J (2011). Image Processing For Super-Resolution Localization Microscopy Utilizing An Fpga Accelerator. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Frank, M and Hamprecht, F A (2011). Image-Based Supervision of a Periodically Working Machine. Pattern Analysis and Applications. 1-10 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (466.61 KB)
Straehle, C N (2011). Interactive Segmentation Of Neural Electron Microscopy Data. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Menze, B H, Kelm, B Michael, Splitthoff, N, Köthe, U and Hamprecht, F A (2011). On oblique random forests. European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2011. Proceedings. Springer. 453-469 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (665.33 KB)
Andres, B, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2011). Probabilistic Image Segmentation with Closedness Constraints. ICCV, Proceedings. 2611 - 2618 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (8.18 MB)
Hanselmann, M, Voss, B, Renard, B Y, Lindner, M, Köthe, U, Kirchner, M and Hamprecht, F A (2011). SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists. Bioinformatics. 27 (7) 987-993 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.2 MB)
Lou, X and Hamprecht, F A (2011). Structured Learning for Cell Tracking. NIPS 2011. Proceedings. 1296-1304 Google Scholar BibTeX RTF EndNote XML Technical Report (1.41 MB)
Kelm, B Michael, Kaster, F O, Henning, A, Weber, M - A, Bachert, P, Bösinger, P, Hamprecht, F A and Menze, B H (2011). Using Spatial Prior Knowledge in the Spectral Fitting of Magnetic Resonance Spectroscopic Images. NMR in Biomedicine. 25(1) 1-13 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.94 MB)
Pfannmöller, M, Flügge, H, Benner, G, Wacker, I, Sommer, C, Hanselmann, M, Schmale, S, Schmidt, H, Hamprecht, F A, Rabe, T, Kowalsky, W and Schröder, R (2011). Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy. Nano Letters. 11 3099-3107 DOI Google Scholar BibTeX RTF EndNote XML

2010
Hüsken, (2010). Active And Online Learning For Interactive Image Analysis. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kaster, F O, Kassemeyer, S, Merkel, B, Nix, O and Hamprecht, F A (2010). An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements. Bildverarbeitung für die Medizin 2010 -- Algorithmen, Systeme, Anwendungen. Springer. 97-101 Google Scholar BibTeX RTF EndNote XML Technical Report (1.12 MB)
Kreshuk, A, Stankiewicz, M, Lou, X, Kirchner, M, Hamprecht, F A and Mayer, M P (2010). Automated detection and analysis of bimodal isotope peak distribution in H/D exchange mass spectrometry using HeXicon. International Journal of Mass Spectrometry. 302 125-131 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (3.22 MB)
Scheelen, C (2010). Automated Quality Control In The Life Sciences. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Hanselmann, M (2010). Computational Methods for the Analysis of Mass Spectrometry Images. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kirchner, M, Renard, B Y, Köthe, U, Pappin, D J, Hamprecht, F A, Steen, J A J and Steen, H (2010). Computational Protein Profile Similarity Screening for Quantitative Mass Spectrometry Experiments. Bioinformatics. 26 (1) 77-83 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (380.19 KB)
Nair, R (2010). Construction And Analysis Of Random Tree Ensembles. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Lou, X, Kirchner, M, Renard, B Y, Köthe, U, Graf, C, Lee, C, Steen, J A J, Steen, H, Mayer, M P and Hamprecht, F A (2010). Deuteration Distribution Estimation with Improved Sequence Coverage for HX/MS Experiments. Bioinformatics. 26(12) 1535-1541 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (518.01 KB)

Publications

2012

2011

2010

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